RetrogeneDB ID: retro_mmus_3582

Retrocopy location

• Organism: Mouse (Mus musculus)
• Coordinates: X:18155285..18155457(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: Myeov2
• Ensembl ID: ENSMUSG00000073616
• Aliases: Myeov2, 1110002M09Rik
• Description: myeloma overexpressed 2 [Source:MGI Symbol;Acc:MGI:1914165]

Sequence

>retro_mmus_3582
ATGGAACTCGCTGTGAATGAGATGTTCTCCGAGGGCGCAGGGCCCTATGTAGACCTGGATGAGGCTGGAGGTAGCTCCGG
ACTCTTGATGGATTTGGCAGCCAATGAAAAGGCAGTTCATGCAGAGTTTTAAAAATGATTTTGAAGATCTCTTTGATGAT
GATGATGTCCAG

Alignment

ORF - retro_mmus_3582 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.21 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MKPAVDEMFPEGAGPYVDLDEAGGSTGLLMDLAANEKAVHAD-FFNDFEDLFDDDDVQ
          M..AV.EMF.EGAGPYVDLDEAGGS.GLLMDLAANEKAVHA..F.NDFEDLFDDDDVQ
Retrocopy MELAVNEMFSEGAGPYVDLDEAGGSSGLLMDLAANEKAVHAE>FKNDFEDLFDDDDVQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain	0.00 RPM	31.47 RPM
SRP007412_cerebellum	0.00 RPM	28.66 RPM
SRP007412_heart	0.00 RPM	25.65 RPM
SRP007412_kidney	0.00 RPM	34.76 RPM
SRP007412_liver	0.00 RPM	18.84 RPM
SRP007412_testis	0.00 RPM	41.99 RPM

ChIP-Seq

RNA Polymerase II actvity near the 5' end of retro_mmus_3582 was not detected

EST

No EST(s) were mapped for retro_mmus_3582 retrocopy.

TSS

No TSS is located nearby retro_mmus_3582 retrocopy 5' end.

Lab

retro_mmus_3582 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_mmus_3582 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000172428	1 retrocopy	retro_hsap_1414,
Macaca mulatta	ENSMMUG00000011336	2 retrocopies	retro_mmul_166, retro_mmul_931,
Monodelphis domestica	ENSMODG00000013501	1 retrocopy	retro_mdom_559,
Mus musculus	ENSMUSG00000073616	1 retrocopy	retro_mmus_3582 ,
Ictidomys tridecemlineatus	ENSSTOG00000000776	1 retrocopy	retro_itri_718,