RetrogeneDB ID: retro_mmur_649

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_4413:203241..204229(+)
• Located in intron of: ENSMICG00000008331

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GPN1
• Ensembl ID: ENSMICG00000014941
• Aliases: None
• Description: GPN-loop GTPase 1 [Source:HGNC Symbol;Acc:17030]

Sequence

>retro_mmur_649
AGCCAAGGCTCTCCACCTTATGTGATCAACCTGGACTCAGCTGTACATGAAGCTCCCTTTCCTGCCAATATTGATATTCA
TGACACTGTCAAGTATAACGAAGTCATGAAACAATATGAACTTGGGCCCAATGGTGGCATAGGGACCTCACTCAATCTTT
TTGCTACCAGGTTTGATCAGATGATGAAATTTATCGAGAAGGCCCAAAGCATGTCTAAATAAGTCCCAATTGACACCCCT
GGACAGATTGAGGTATTCACCTGGTCAGCTTCTGGAAGAATTATCACTGAGGCCCTGGCATCCTCAGCTCCAATAGTTGT
CATCTATATCATGGACACATCTCGAAGTACCAACCCAGTGACCTTTATGTCCAACATGCTGTATGCCTGCAGCATCTTGT
ACAAAACCAAGCTGCCTTTCATGGTGGTCATGAATAAAACTGATGTCACTGATCACAGCTTTGCAGTGGAATGGATGCAG
GACTTTGAGGCTTTCCAAGATGCCTTGAATCAAGAGACTACATATGTCAGTAACCTGACCCTCTCAGTGAGCCTGGTGTT
AGATGAGTTCGACAGCTCATTGAGTTCTACAGTACCTATTCTGAGTACTGGCTTAGATGAATTCTTTGTGCAAGTCGCCA
GTGCTGCAGAAGAATATGAGAGGGAATATCGTCCTGAATATGAACGTCTGAAGAAATCGTTGGCTAGTGCACAGAGCCAA
TAGCAAAAAGAACAACTGGGATGACTTCAGAAAGATACGGGCAGGCTCTGTAGCCTTGGACACAGGCACTGCCAAAGACA
GCTTATCTCCTGTGCTGGACCCTTCTGATATGATCCTGACTCGAGGAACCTTCAATGAAGAGGATGAGGAAGCAGACAGT
GATACTGACAACACTGACCACAGCGTTACAGAGGAAAGCCAGGAAGAGCCAGCATTCCAGAATTTTATGCAAGAATCAAT
GGCACAGTGTTGGAAGAGAAACAACAAA

Alignment

ORF - retro_mmur_649 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.31 %
• Parental protein coverage: 95.93 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  SQGSPPYVINLDPAVHEVPFPANIXXXXXXXXXXXXXXYGLGPNGGIVTSLNLFATRFDQXXXXXXXXXX
          SQGSPPYVINLD.AVHE.PFPANI..............Y.LGPNGGI.TSLNLFATRFDQ..........
Retrocopy SQGSPPYVINLDSAVHEAPFPANIDIHDTVKYNEVMKQYELGPNGGIGTSLNLFATRFDQMMKFIEKAQS

Parental  XXXYVLIDTPGQIEVFTWSASGTIITEALASSFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPF
          ....V.IDTPGQIEVFTWSASG.IITEALASS.P.VVIY.MDTSRSTNPVTFMSNMLYACSILYKTKLPF
Retrocopy MSK*VPIDTPGQIEVFTWSASGRIITEALASSAPIVVIYIMDTSRSTNPVTFMSNMLYACSILYKTKLPF

Parental  IVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDEF
          .VVMNKTD..DHSFAVEWMQDFEAFQDALNQETTYVSNLT.S.SLVLDEF.SSL........L.TGLDEF
Retrocopy MVVMNKTDVTDHSFAVEWMQDFEAFQDALNQETTYVSNLTLSVSLVLDEFDSSLS--STVPILSTGLDEF

Parental  FVQVTSAAEEYEREYRPEYERLKKSLASAQSQHQ-KEQLERLRK-DMGSVALDTGTAKDSLSPVLDPSDL
          FVQV.SAAEEYEREYRPEYERLKKSLASAQSQ.Q.K......RK...GSVALDTGTAKDSLSPVLDPSD.
Retrocopy FVQVASAAEEYEREYRPEYERLKKSLASAQSQ*Q>KNNWDDFRKIRAGSVALDTGTAKDSLSPVLDPSDM

Parental  ILTRGTLDEEDEEADSDTDDIDHKVTEESQEEPAFQNFMQESMAQYWKRNDK
          ILTRGT..EEDEEADSDTD..DH.VTEESQEEPAFQNFMQESMAQ.WKRN.K
Retrocopy ILTRGTFNEEDEEADSDTDNTDHSVTEESQEEPAFQNFMQESMAQCWKRNNK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_649 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_649 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Erinaceus europaeus	ENSEEUG00000013421	1 retrocopy	retro_eeur_146,
Microcebus murinus	ENSMICG00000014941	1 retrocopy	retro_mmur_649 ,
Ictidomys tridecemlineatus	ENSSTOG00000006379	2 retrocopies	retro_itri_1428, retro_itri_1718,
Tupaia belangeri	ENSTBEG00000007425	1 retrocopy	retro_tbel_3907,