RetrogeneDB ID: retro_mmur_462

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_3276:11517..12285(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: KAT8
• Ensembl ID: ENSMICG00000001625
• Aliases: None
• Description: K(lysine) acetyltransferase 8 [Source:HGNC Symbol;Acc:17933]

Sequence

>retro_mmur_462
ACCTCACTCCAGGTCATATAGACTTCCCACATCGGGAACTACAAAGTTGATGCCTGGTACTTCTCACTGTTCCCTGAAGA
CTACGGGAAACAGCCCAAGCTCTGGCTGTGCGAGTACTGCCTCCAGTACATGAAATACGAGAAGAGCTACCGCTTCCACT
TGGGCCAGTGTCAGTGGTGGCAGCCCCCTGGGATTTACCGCAAGAGCAACATCTCTGTGTAAGAAGGACGGCAAGACCAC
AAGATTTACTGTCAGAACCTGTGTCTGCTGGCCAAGCTCTTCCTGGACCACAAGACGTTGTACTTTGACGTGGAGCCCTT
GGTCTTTTACATTTTGACTGAGGTGGACAGGCAAGGGGCCCACATTGTCGGCTACTTTTCTAAGGAGAAGGAGTCTCCAG
ATGGAAACAACGTGGCCTGCATCCTCACCCTGCCCCCACCAGCACCGTGCTACAGAAAGTTCCTTGTTGCTCCCAGTGAC
GAGCTCTCCAAGCTAGAGAGCACAGTAGGCTCCCCAGAGAAGCCGCTGTCTGGCCTGGGCAGACTCAGCTACTGCAGCTA
TTGGTCGTGGGTCCTGCTGGAGATCCCGCAGGACTTCTGGGGCACGCTGCCCATCAAGGACCTTAGCCAGATGGCCAGTA
TCACCCAGAATGACATCACCAGTACCCTGCAGTCCCTCAACATGGTCAAGTACTGGAAAGGCCAGCATGTGATCTGTGTC
ACACCCACACTGGTAGAGGAACACCTTAAAAGTTGCCCACCCATCACA

Alignment

ORF - retro_mmur_462 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.95 %
• Parental protein coverage: 56.53 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  TKVKYVDKIHIGNYEIDAWYFSPFPEDYGKQPKLWLCEYCLKYMKYEKSYRFHLGQCQWRQPPGKEIYRK
          T........HIGNY..DAWYFS.FPEDYGKQPKLWLCEYCL.YMKYEKSYRFHLGQCQW.QPPG..IYRK
Retrocopy TSLQVI*TSHIGNYKVDAWYFSLFPEDYGKQPKLWLCEYCLQYMKYEKSYRFHLGQCQWWQPPG--IYRK

Parental  SNISVYEVDGKDHKIYCQNLCLLAKLFLDHKTLYFDVEPFVFYILTEVDRQGAHIVGYFSKEKESPDGNN
          SNISV.E....DHKIYCQNLCLLAKLFLDHKTLYFDVEP.VFYILTEVDRQGAHIVGYFSKEKESPDGNN
Retrocopy SNISV*E-GRQDHKIYCQNLCLLAKLFLDHKTLYFDVEPLVFYILTEVDRQGAHIVGYFSKEKESPDGNN

Parental  VACILTLPPYQRRGYGKFLIAFSYELSKLESTVGSPEKPLSDLGKLSYRSYWSWVLLEILRDFRGTLSIK
          VACILTLPP.....Y.KFL.A.S.ELSKLESTVGSPEKPLS.LG.LSY.SYWSWVLLEI..DF.GTL.IK
Retrocopy VACILTLPP-PAPCYRKFLVAPSDELSKLESTVGSPEKPLSGLGRLSYCSYWSWVLLEIPQDFWGTLPIK

Parental  DLSQMTSITQNDIISTLQSLNMVKYWKGQHVICVTPKLVEEHLKSAQYKKPPIT
          DLSQM.SITQNDI.STLQSLNMVKYWKGQHVICVTP.LVEEHLKS.....PPIT
Retrocopy DLSQMASITQNDITSTLQSLNMVKYWKGQHVICVTPTLVEEHLKSC----PPIT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_462 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_462 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000001625	1 retrocopy	retro_mmur_462 ,
Myotis lucifugus	ENSMLUG00000004779	1 retrocopy	retro_mluc_1916,
Monodelphis domestica	ENSMODG00000001856	1 retrocopy	retro_mdom_1344,
Rattus norvegicus	ENSRNOG00000019585	1 retrocopy	retro_rnor_1626,
Sarcophilus harrisii	ENSSHAG00000011739	1 retrocopy	retro_shar_568,