RetrogeneDB ID: retro_mluc_1916

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429946:2699053..2700426(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000030445
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: KAT8
• Ensembl ID: ENSMLUG00000004779
• Aliases: None
• Description: None

Sequence

>retro_mluc_1916
ATGGCGGCCCCGGGGGCGGCTGCAGCGGTTGCGGCCGCGACTTCAGGGGTCGCGGGGGAGGGCGAGCCCGGGCCGGGGAG
AATGCGGCGGTTGAGGGGGCCGCCCCATCCCCGGGCCGCCTCTCTCCACCGACCCCCGCGCGCGGCGAGCCGGAAGTCAC
TGTGGAGATCGGAGAGACTTACCTGTGCCGGCGGCCGGACAGCACCTGGCATTCTGCTGAAGTGATCCAGTCTCGAGTGA
ATGACCAGGAGGGCCGAGAGGAATTCTATGTGCACTATGTGGGCTTTAACCGGCGGCTAGACGAATGGGTAGACAAGAAC
CGGCTGGCACTGACCAAGACCGTGAAGGATGCTGTGCAGAAGAACTCGGAGAAGTACCTGAGCGAGCTGGCCGAGCAGCC
TGAACGCAAGATCACTCGAAACCAAAAGCGCAAGCATGATGAGATCAACCATGTACAGAAGACCTATGCAGAGATGGACC
CTACAACAGCAGCTTTGGAGAAAGAACACGAGGCGATCACCAAGGTGAAGTATGTGGACAAGATCCACATCGGGAACTAC
GAAATCGATGCCTGGTACTTCTCACCGTTCCCCGAAGACTATGGGAAGCAGCCCAAGCTCTGGCTCTGCGAGTACTGCCT
CAAGTACATGAAGTATGAGAAGAGCTACCGCTTCCACCTGGGCCAGTGTCAGTGGCGGCAGCCCCCCGGAAAGGAGATCT
ACCGCAAGAGCAACATCTCTGTGTACGAGGTGGATGGCAAAGACCACAAGATTTACTGTCAGAACCTGGGTCTTCTGGCC
AAGCTTTTCCTGGACCACAAAACATTGTACTTCGACGTGGAGCCCTTCGTCTTTTATATCTTGACTGAGGTGGACAGGCA
GGGGGCCCACATCGTTGGCTACTTCTCAAAGGAGAAGGAGTCTCCAGATGGAAACAATGTGGCCTGCATCCTGACCCTGC
CTCCCTACCAGCGCCGCGGCTACGGAAAGTTCCTCATTGCTTTCAGTTATGAGCTATCCAAGCTAGAGAGCACAGTAGGC
TCCCCTGAGAAGCCACTGTCCGACCTGGGCAAGCTCAGCTACCGCAGCTACTGGTCTTGGGTCCTGCTGGAGATTCTGCG
AGATTTCCGTGGCACGCTGTCCATCAAGGACCTAAGCCAGATGACCAGCATCACTCAGAATGACATCATCAGCACCTTAC
AGTCCCTCAACATGGTCAAGTACTGGAAAGGCCAGCATGTCATCTGTGTCACACCCAAGCTAGTAGAGGAGCACCTCAAA
AGTGCTCAGTATAAGAAACCATCCATAACAGTGGACTCTCTTTGCCTCAAGTGGGCGCCCCCCAAGCACAAGCAAGTCAA
ACTTTCCAAGAAG

Alignment

ORF - retro_mluc_1916 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.35 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MAAPGAAAAVAAATSGVAGEGEPGP-GENAAVEGAAPSPGRLSPPTPARGEPEVTVEIGETYLCRRPDST
          MAAPGAAAAVAAATSGVAGEGEPGP.GENAAVEGAAPSPGRLSPPTPARGEPEVTVEIGETYLCRRPDST
Retrocopy MAAPGAAAAVAAATSGVAGEGEPGP<GENAAVEGAAPSPGRLSPPTPARGEPEVTVEIGETYLCRRPDST

Parental  WHSAEVIQSRVNDQEGREEFYVHYVGFNRRLDEWVDKNRLALTKTVKDAVQKNSEKYLSELAEQPERKIT
          WHSAEVIQSRVNDQEGREEFYVHYVGFNRRLDEWVDKNRLALTKTVKDAVQKNSEKYLSELAEQPERKIT
Retrocopy WHSAEVIQSRVNDQEGREEFYVHYVGFNRRLDEWVDKNRLALTKTVKDAVQKNSEKYLSELAEQPERKIT

Parental  RNQKRKHDEINHVQKTYAEMDPTTAALEKEHEAITKVKYVDKIHIGNYEIDAWYFSPFPEDYGKQPKLWL
          RNQKRKHDEINHVQKTYAEMDPTTAALEKEHEAITKVKYVDKIHIGNYEIDAWYFSPFPEDYGKQPKLWL
Retrocopy RNQKRKHDEINHVQKTYAEMDPTTAALEKEHEAITKVKYVDKIHIGNYEIDAWYFSPFPEDYGKQPKLWL

Parental  CEYCLKYMKYEKSYRFHLGQCQWRQPPGKEIYRKSNISVYEVDGKDHKIYCQNLCLLAKLFLDHKTLYFD
          CEYCLKYMKYEKSYRFHLGQCQWRQPPGKEIYRKSNISVYEVDGKDHKIYCQNL.LLAKLFLDHKTLYFD
Retrocopy CEYCLKYMKYEKSYRFHLGQCQWRQPPGKEIYRKSNISVYEVDGKDHKIYCQNLGLLAKLFLDHKTLYFD

Parental  VEPFVFYILTEVDRQGAHIVGYFSKEKESPDGNNVACILTLPPYQRRGYGKFLIAFSYELSKLESTVGSP
          VEPFVFYILTEVDRQGAHIVGYFSKEKESPDGNNVACILTLPPYQRRGYGKFLIAFSYELSKLESTVGSP
Retrocopy VEPFVFYILTEVDRQGAHIVGYFSKEKESPDGNNVACILTLPPYQRRGYGKFLIAFSYELSKLESTVGSP

Parental  EKPLSDLGKLSYRSYWSWVLLEILRDFRGTLSIKDLSQMTSITQNDIISTLQSLNMVKYWKGQHVICVTP
          EKPLSDLGKLSYRSYWSWVLLEILRDFRGTLSIKDLSQMTSITQNDIISTLQSLNMVKYWKGQHVICVTP
Retrocopy EKPLSDLGKLSYRSYWSWVLLEILRDFRGTLSIKDLSQMTSITQNDIISTLQSLNMVKYWKGQHVICVTP

Parental  KLVEEHLKSAQYKKPPITVDSLCLKWAPPKHKQVKLSKK
          KLVEEHLKSAQYKKP.ITVDSLCLKWAPPKHKQVKLSKK
Retrocopy KLVEEHLKSAQYKKPSITVDSLCLKWAPPKHKQVKLSKK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1916 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000001625	1 retrocopy	retro_mmur_462,
Myotis lucifugus	ENSMLUG00000004779	1 retrocopy	retro_mluc_1916 ,
Monodelphis domestica	ENSMODG00000001856	1 retrocopy	retro_mdom_1344,
Rattus norvegicus	ENSRNOG00000019585	1 retrocopy	retro_rnor_1626,
Sarcophilus harrisii	ENSSHAG00000011739	1 retrocopy	retro_shar_568,