RetrogeneDB ID: retro_mmur_1220

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_33745:892..1247(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ARL8B
• Ensembl ID: ENSMICG00000000244
• Aliases: None
• Description: ADP-ribosylation factor-like 8B [Source:HGNC Symbol;Acc:25564]

Sequence

>retro_mmur_1220
ATCTGGGACATAGGAGGACAACCCCGAGTTCGAAAGCATATGGAACAGTATTGCAGAGGAGTTAACATTATTGTTTACAT
GATAAATGCCGCGGATCGTGAAAAGATAGAAGCCTCCCGAAATGAGCTGCATAATCTTCTAGATAAACCACAGTTACAAG
GAATTCCAGTGCTAGTACTTGGAAACAAGAGAGATCTTCCTAATGCCTTGGATAAGAAACAGCTAATTGAAGAAATGAAA
CTGTCTGCTATTCAGGACAGAGAAATTTGCTGCTATTCAATTTCTTGCACAGAAAAGGATTAATATAGATAGTACACTTC
AGTGGCTTATTCAACATTCAAAATCTAGAAGAAGC

Alignment

ORF - retro_mmur_1220 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.08 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  IWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNAL
          IWDIGGQPR.R...E.YCRGVN.IVYMI.AADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNAL
Retrocopy IWDIGGQPRVRKHMEQYCRGVNIIVYMINAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNAL

Parental  DEKQLIEKMNLSAIQDREICCYSISCKEKD-NIDITLQWLIQHSKSRRS
          D.KQLIE.M.LSAIQDREICCYSISC.EKD.NID.TLQWLIQHSKSRRS
Retrocopy DKKQLIEEMKLSAIQDREICCYSISCTEKD>NIDSTLQWLIQHSKSRRS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1220 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1220 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 13 parental genes, and 21 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000007757	2 retrocopies	retro_chof_1196, retro_chof_2630,
Callithrix jacchus	ENSCJAG00000015842	2 retrocopies	retro_cjac_1120, retro_cjac_470,
Homo sapiens	ENSG00000134108	1 retrocopy	retro_hsap_361,
Gallus gallus	ENSGALG00000008314	1 retrocopy	retro_ggal_25,
Gorilla gorilla	ENSGGOG00000004952	1 retrocopy	retro_ggor_373,
Microcebus murinus	ENSMICG00000000244	2 retrocopies	retro_mmur_1220 , retro_mmur_1239,
Microcebus murinus	ENSMICG00000002015	3 retrocopies	retro_mmur_1528, retro_mmur_1558, retro_mmur_360,
Microcebus murinus	ENSMICG00000017545	1 retrocopy	retro_mmur_37,
Mustela putorius furo	ENSMPUG00000017035	2 retrocopies	retro_mputfur_1390, retro_mputfur_541,
Oryctolagus cuniculus	ENSOCUG00000014090	2 retrocopies	retro_ocun_1942, retro_ocun_751,
Pongo abelii	ENSPPYG00000013694	1 retrocopy	retro_pabe_343,
Tarsius syrichta	ENSTSYG00000001724	1 retrocopy	retro_tsyr_2150,
Vicugna pacos	ENSVPAG00000012114	2 retrocopies	retro_vpac_495, retro_vpac_519,