Parental gene:

ARL8B, ENSCJAG00000015842

Aliases:None
Description:ADP-ribosylation factor-like 8B [Source:HGNC Symbol;Acc:25564]
Organism:Marmoset (Callithrix jacchus)
Coordinates:15:56962361..57012205(+)


>ENSCJAG00000015842
ATGACCCGCTCGGCTTCCTGGCTCTGGCAGCTGCAGCCCGCCGGTGTCCGTCCGTGTCGTGCCGTGGCCCCGAGGAGCCG
TTGCGCTCGTGTGGAATTCGTTGACGCCACCGCTCGTCCGTCCTCCCGTCCGTCCTCGCTCCCGGCCGCCATCATGCTGG
CGCTCATCTCTCGTCTGCTGGACTGGTTCCGTTCGCTCTTCTGGAAGGAGGAGATGGAGCTGACGCTCGTGGGTCTGCAG
TACTCCGGCAAGACCACCTTCGTCAATGTCATCGCGTCAGGTCAGTTCAGTGAAGATATGATACCCACAGTGGGCTTCAA
CATGAGGAAGGTAACTAAAGGTAACGTCACAATAAAGATCTGGGACATAGGAGGACAACCCCGATTTCGAAGCATGTGGG
AGCGGTATTGCAGAGGAGTCAATGCTATTGTTTACATGATAGATGCTGCAGATCGTGAAAAGATAGAAGCTTCCCGAAAT
GAGCTACATAATCTTCTAGATAAACCACAGTTACAAGGAATTCCAGTGCTAGTGCTTGGAAACAAGAGAGATCTTCCTAA
TGCCTTGGATGAGAAACAGCTAATTGAAAAAATGAATCTGTCTGCTATTCAGGATAGAGAAATTTGCTGCTATTCAATTT
CTTGCAAAGAAAAGGATAATATAGATATCACACTTCAGTGGCTTATTCAGCATTCAAAATCTAGAAGAAGCTGA

Library Parental gene expression (RPM)
SRP051959_spleen 32 .00 RPM
SRP051959_skeletal_muscle 43 .37 RPM
SRP051959_lymph_node 21 .32 RPM
SRP051959_lung 26 .14 RPM
SRP051959_liver 23 .55 RPM
SRP051959_kidney 33 .77 RPM
SRP051959_heart 29 .92 RPM
SRP051959_colon 19 .15 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000007757 ortholog_one2one 2 retrogenes
retro_chof_1196, retro_chof_2630,
Callithrix jacchus ENSCJAG00000016671 other_paralog 10 retrogenes
retro_cjac_1295, retro_cjac_1691, retro_cjac_1719, retro_cjac_2189, retro_cjac_2896, retro_cjac_300, retro_cjac_3181, retro_cjac_3311, retro_cjac_3335, retro_cjac_390,
Callithrix jacchus ENSCJAG00000019922 other_paralog 1 retrogene
retro_cjac_507,
Homo sapiens ENSG00000134108 ortholog_one2one 1 retrogene
retro_hsap_361,
Gallus gallus ENSGALG00000008314 ortholog_one2one 1 retrogene
retro_ggal_25,
Gorilla gorilla ENSGGOG00000004952 ortholog_one2one 1 retrogene
retro_ggor_373,
Microcebus murinus ENSMICG00000000244 ortholog_one2one 2 retrogenes
retro_mmur_1220, retro_mmur_1239,
Mustela putorius furo ENSMPUG00000017035 ortholog_one2one 2 retrogenes
retro_mputfur_1390, retro_mputfur_541,
Oryctolagus cuniculus ENSOCUG00000014090 ortholog_one2one 2 retrogenes
retro_ocun_1942, retro_ocun_751,
Pongo abelii ENSPPYG00000013694 ortholog_one2one 1 retrogene
retro_pabe_343,
Tarsius syrichta ENSTSYG00000001724 ortholog_one2one 1 retrogene
retro_tsyr_2150,
Vicugna pacos ENSVPAG00000012114 ortholog_one2one 2 retrogenes
retro_vpac_495, retro_vpac_519,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_470 69.51 67.51
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2. retro_cjac_1120 73.15 89.45
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Download FASTA sequences of all ENSCJAG00000015842 retrocopies