RetrogeneDB ID: retro_mmur_1151

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_26330:7790..8276(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMICG00000017899
• Aliases: None
• Description: None

Sequence

>retro_mmur_1151
CACCTGGCTGCCTGATTGGGTGAGGTATCAAAACTTGAGAACATCGTGTCGTTGAATCCATCATGCGTGAATGACAGAGA
TTGGAAGAGCAGGACCGCTCTACATTTGGCCTGTGCCACTGGCCAGGCAGAAGTGGTAAGACTCCTGGTAAACAGAAAGT
GCCAACTTAACTTGTTTGACAGCAAAAGGAGGACAGCTCTGATGAAGGTCGTTCAATGCCAGGAGGAGGAATGTGTAACT
GTACTGCTGGACAGTCAGGCCAATGTAAATCTTGAGGATATCTATGGAAACACTGATCTTCACTATGCTGTTTATCACAA
GAATTTATCAATAGCAGATAAACTGCTCTCAAATGGTCCATTTATTGATCCCCAAAACAAGAGCCATGTCACACTACTTT
TACTTGCTGTAAGTCAAGAAGAAGAAGAAATGGTGGACTTTTTAGTAAAGGCTGGAGCAAACATAAATGCAGTTGATAAG
TTGAAA

Alignment

ORF - retro_mmur_1151 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 50.62 %
• Parental protein coverage: 68.64 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  HRAASLGDASKVQRILSRKKSVLDAKXXXXXTALHLACANGHSEVVTILVNSLCDINVCDSTKTTPLMKA
          H.AA.LG..SK...I.S...S..........TALHLACA.G..EVV..LVN..C..N..DS...T.LMK.
Retrocopy HLAA*LGEVSKLENIVSLNPSCVNDRDWKSRTALHLACATGQAEVVRLLVNRKCQLNLFDSKRRTALMKV

Parental  VQCHKGECTSILLKYGADPNRTDIYGNTALHHVAYHQDVSLAAKLLSYGANLEALNKDHLTPLLLAVRRT
          VQC...EC...LL...A..N..DIYGNT.LH...YH...S.A.KLLS.G......NK.H.T.LLLAV...
Retrocopy VQCQEEECVTVLLDSQANVNLEDIYGNTDLHYAVYHKNLSIADKLLSNGPFIDPQNKSHVTLLLLAVSQE

Parental  NDEMVKFLVEQNANINAVDKME
          ..EMV.FLV...ANINAVDK..
Retrocopy EEEMVDFLVKAGANINAVDKLK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1151 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1151 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 6 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000008211	2 retrocopies	retro_cjac_2331, retro_cjac_2672,
Microcebus murinus	ENSMICG00000017899	2 retrocopies	retro_mmur_1151 , retro_mmur_246,
Macaca mulatta	ENSMMUG00000008983	1 retrocopy	retro_mmul_1761,
Nomascus leucogenys	ENSNLEG00000016858	1 retrocopy	retro_nleu_2713,
Pongo abelii	ENSPPYG00000019046	1 retrocopy	retro_pabe_1037,
Tupaia belangeri	ENSTBEG00000017150	1 retrocopy	retro_tbel_490,