RetrogeneDB ID: retro_mluc_924

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429783:783025..783489(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NIPSNAP3A
• Ensembl ID: ENSMLUG00000010147
• Aliases: None
• Description: None

Sequence

>retro_mluc_924
TTTACAAGCTTTGCTCAATGAACTGAAGTTTAGAAAGGCTTGGATAAATATAAGGAATGCCAAGAACAATTTCTCATTCT
AAATTTGGCTCTCGCGGATAGACAAGAGTTCTGAGGTTACTTATGCAGGACTGTGGTGCATGAGAGAAAACTCTCCAAAA
AGAGTCTATAAATTGATTCTTTTCCCAAATTAAACCAGGTGGGCCAGCTCTGTGGGGTGACGCATTTAAAAGGGCACTTG
ATGCCCATGTCAAATTAGGCTGCGAAAAACTAATTGGCATTCTCCACCCAGAATCTGGAGCACCCAGCAGAGTTCACGCT
CATTGGTGAAATGAGAGTTCAGACAGTCATGCACCTGGGAGACATCAGTGTCTTGAGGATCTCAGACTCACGGTGGCTAT
TTGGGAAAATGTCAACTACCCCGTGTCACAGTTGAATATGCTTCTGATTCCCATCATTTTCAGC

Alignment

ORF - retro_mluc_924 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 58.6 %
• Parental protein coverage: 62.75 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  YDNFAHRIEVRKALAKDKEWQEQFLIPNLALMDKQE-SEITYLVPWCKLEKPPKEGVYELVTF-QMKPGG
          ...FA...EV.K.L.K.KE.QEQFLI.NLAL.D.QE.SE.TY...WC..E..PK..VY.L..F.Q.KPGG
Retrocopy FTSFAQ*TEV*KGLDKYKECQEQFLILNLALADRQE>SEVTYAGLWCMRENSPKR-VYKLILF>QIKPGG

Parental  PAVWGDTFKKAINAHVILGYSKLVGVFHTEYGALNRVHVLWWNESADSRAAGRHKAHEDPRVVAAVRECV
          PA.WGD.FK.A..AHV.LG..KL.G..H.E.GA..RVH..W.NES.DS.A.GRH...ED.R...A..E.V
Retrocopy PALWGDAFKRALDAHVKLGCEKLIGILHPESGAPSRVHAHW*NESSDSHAPGRHQCLEDLRLTVAIWENV

Parental  NYLVSQQNMLLIPTSFS
          NY.VSQ.NMLLIP..FS
Retrocopy NYPVSQLNMLLIPIIFS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_924 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000014253	1 retrocopy	retro_acar_133,
Canis familiaris	ENSCAFG00000023949	1 retrocopy	retro_cfam_295,
Cavia porcellus	ENSCPOG00000009373	1 retrocopy	retro_cpor_690,
Dasypus novemcinctus	ENSDNOG00000000943	1 retrocopy	retro_dnov_482,
Echinops telfairi	ENSETEG00000016120	1 retrocopy	retro_etel_1335,
Myotis lucifugus	ENSMLUG00000010147	1 retrocopy	retro_mluc_924 ,
Oryctolagus cuniculus	ENSOCUG00000007880	1 retrocopy	retro_ocun_1385,
Tursiops truncatus	ENSTTRG00000012307	1 retrocopy	retro_ttru_1702,