RetrogeneDB ID: retro_mluc_743

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429774:776775..777213(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000026770
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: GMNN
• Ensembl ID: ENSMLUG00000014849
• Aliases: None
• Description: None

Sequence

>retro_mluc_743
ATTAACCCCAATATGAAGCAGAAGCAGGAAGGCACCCATGGGCGCGTGCAGAGCAGTCCTGTCCCGAGGAGGACCCTGAA
GATGATCCAGCCGTCCACAGCCGGGCCCCTCGTAGGCAGAGAGAACGAGCTGGTTAAAGGCTCGTTCAAACCGAAGCATC
GCAGTGATCAGTCGGCCTCTAAGACTTCGGGCTCTGGAGTCCCTGCTGTCCCGGAGCACGGTGAGAGCCCGGAGCTCCGA
GGGGTTACCCAGGAGGCACTGGATCTCATGGCTGCAGAAAACCTGTCCTCTCAGTATTGGAAGGAAGTGGCGGAGCAGCG
GCGGAAGGCGCTCTATGAAGCGCTGAAGGAAAACGAGAAGCTCCACCGAGAGATCGAGCAGAAGGCAAGTGAGATCGCCC
GCCTGCAGAGGGAGAACCAGGAGCTGGCGGAGGTGGCG

Alignment

ORF - retro_mluc_743 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.52 %
• Parental protein coverage: 71.22 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MNPNMKQKQEGTHGRVQSSPVPRRTLKMIQPSTAGPLVGRENELVKGSFKPKHRSDQSASKTSGSGVPAV
          .NPNMKQKQEGTHGRVQSSPVPRRTLKMIQPSTAGPLVGRENELVKGSFKPKHRSDQSASKTSGSGVPAV
Retrocopy INPNMKQKQEGTHGRVQSSPVPRRTLKMIQPSTAGPLVGRENELVKGSFKPKHRSDQSASKTSGSGVPAV

Parental  PEHGESKELGGVTQEALDLMAAENPSSQYWKEVAEQRRKALYEALKENEKLHRDIEQKTSEIARLQRENR
          PEHGES.EL.GVTQEALDLMAAEN.SSQYWKEVAEQRRKALYEALKENEKLHR.IEQK.SEIARLQREN.
Retrocopy PEHGESPELRGVTQEALDLMAAENLSSQYWKEVAEQRRKALYEALKENEKLHREIEQKASEIARLQRENQ

Parental  ELAAVA
          ELA.VA
Retrocopy ELAEVA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_743 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000006161	1 retrocopy	retro_cjac_1012,
Microcebus murinus	ENSMICG00000014010	1 retrocopy	retro_mmur_594,
Myotis lucifugus	ENSMLUG00000014849	2 retrocopies	retro_mluc_1589, retro_mluc_743 ,
Monodelphis domestica	ENSMODG00000011682	1 retrocopy	retro_mdom_1800,
Mus musculus	ENSMUSG00000006715	2 retrocopies	retro_mmus_1525, retro_mmus_2213,
Oryctolagus cuniculus	ENSOCUG00000000728	1 retrocopy	retro_ocun_613,
Otolemur garnettii	ENSOGAG00000004982	1 retrocopy	retro_ogar_1726,
Ochotona princeps	ENSOPRG00000007969	1 retrocopy	retro_opri_439,
Rattus norvegicus	ENSRNOG00000018782	1 retrocopy	retro_rnor_820,
Sarcophilus harrisii	ENSSHAG00000004058	2 retrocopies	retro_shar_581, retro_shar_769,
Tupaia belangeri	ENSTBEG00000010502	2 retrocopies	retro_tbel_1028, retro_tbel_353,