RetrogeneDB ID: retro_mluc_737

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429773:12334270..12334836(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000023524
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000009196
• Aliases: None
• Description: None

Sequence

>retro_mluc_737
GCAGGGAAGACATACAAACTACTGAACTGTGACAAGCACAAGTCTATGTTGTTGAAGAATGGACGGGATCCGGGGGAAGT
GAGACCAGACATAGCTCACCAGAGTTTACTGATGCTGATGGACAGTCCCCTGAACCGAGCTGGCTTGCTGCAGGTTTATA
TCCATGCACAGAAGAATGTGCTGATTGAAGTGAACCCCCAGACTCGAATTCCCAGAACCTTTGACCACTTTTGTGGCCTC
ATGGTTCAGCTTTTACACAAACTCAGTGTTCGAGCAGCTGATGGCCCCCAGAAGCTCTTGAAGGTAATTAAAAATCCAGT
GTCAGATCACTTTCCCAGTTGGATGTATGAAAATTGGCACTTCTTTTTTCCATCCCAGTCGTCAGTGATGTGCGAGAGTT
GGTCCCCAGCAGCGACCCTGTTGTTTTTGTGGTGGGGCCTTTGTCCATGGCAAGCTCAATGTGGAGTATACAGAGAAGAT
GGTGTCCATCAGCAACTACCCCCTTTTCTGCTGCTCTAACCTGCGCAAAACTTACCACAGCCTTTGAGGAAGTGTGGAGG
GTCATT

Alignment

ORF - retro_mluc_737 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.33 %
• Parental protein coverage: 77.24 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  AGKTYELLNCDKHKSMLLKNGRDPGEVRPDIAHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEVNPQTRI
          AGKTY.LLNCDKHKSMLLKNGRDPGEVRPDIAHQSLLMLMDSPLNRAGLLQVYIH.QKNVLIEVNPQTRI
Retrocopy AGKTYKLLNCDKHKSMLLKNGRDPGEVRPDIAHQSLLMLMDSPLNRAGLLQVYIHAQKNVLIEVNPQTRI

Parental  PRTFDRFCGLMALVQLLHKLSVRAADGPQKLLKVIKNPVSDH-FPVGCMKIGTS-FSIPVVSDVRELVPS
          PRTFD.FCGLM..VQLLHKLSVRAADGPQKLLKVIKNPVSDH.FPVGCMKIGTS.FSIPVVSDVRELVPS
Retrocopy PRTFDHFCGLM--VQLLHKLSVRAADGPQKLLKVIKNPVSDH>FPVGCMKIGTS>FSIPVVSDVRELVPS

Parental  SDPIVFVV-GAFAHGKLNVEYTEKMVSISNYPL-SAALTCAKLTTAFEEVWRVI
          SDP.VFVV.GAF.HGKLNVEYTEKMVSISNYPL.SAALTCAKLTTAFEEVWRVI
Retrocopy SDPVVFVV<GAFVHGKLNVEYTEKMVSISNYPL>SAALTCAKLTTAFEEVWRVI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_737 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 10 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000013753	1 retrocopy	retro_amel_1924,
Callithrix jacchus	ENSCJAG00000007120	1 retrocopy	retro_cjac_2960,
Gorilla gorilla	ENSGGOG00000004287	1 retrocopy	retro_ggor_3077,
Macropus eugenii	ENSMEUG00000000831	1 retrocopy	retro_meug_1299,
Myotis lucifugus	ENSMLUG00000009196	1 retrocopy	retro_mluc_737 ,
Macaca mulatta	ENSMMUG00000010207	1 retrocopy	retro_mmul_671,
Nomascus leucogenys	ENSNLEG00000005080	1 retrocopy	retro_nleu_501,
Otolemur garnettii	ENSOGAG00000006975	2 retrocopies	retro_ogar_2971, retro_ogar_945,
Pongo abelii	ENSPPYG00000004215	1 retrocopy	retro_pabe_2924,
Rattus norvegicus	ENSRNOG00000012828	1 retrocopy	retro_rnor_1459,