RetrogeneDB ID: retro_mluc_691

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429771:7321059..7321997(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SERBP1
• Ensembl ID: ENSMLUG00000001424
• Aliases: None
• Description: None

Sequence

>retro_mluc_691
AGGAGCACAGCTCAGGCACAGCCCAGACCAACTCCAATGCAGCAGGCAAATAGCTGTGTAAAGAGTCCCAGAAAGAACGC
AAGAACCCATTGCCTTCCAACATAGCGGTGGCTGACAAGAAAGAGGAGACACAGCCACCCCTGTGGTGCTTAAGAAAGAA
GGAATAACACGTGTTGGAAGAAAACGGGATCAACAACTTCAGGGTGAAGGGAAAAATAATTGATAGGAGACCACAACGGC
GACCACCTCGTGAACGATGATTTGAAAAGTCACTTGAAGAAAAAGGTGAAGGAGGAGAATTTTAAGTTGATAGACCTATT
GTTCACCGGCCTATCCGAGGCTGTGGTGGTCTTGGAAGAGGTTGAGGACCCGGTGAACGTGGAATGGGCCGAGGAGATGG
ATTTGATTCTCGTGGCAAACGTGAATTTAATAGGCATAGTGTAAGTGATAGATCTTTCTCACATTACAGTGGCCTGAAGC
ATGAGGTCAAACATGGAGGTAGCGGATCTCACAACTGGGGAACTGTCAAAGATGAATTAACTGACTTGGAGCAACCAAAT
GTGACTGAGGAAATACCTGAAGTTGAAGAACATCCAGTTGCAAACACTGAAAATAAGGAAAACAAAGTTGAAGAAGTAAA
GGAAGAGGGTCCAAAAGAAATGACTTTGGATGAGTGGAAGGCTATTCAAAATAAGGACCAGGCAAAAGTAGAATTTAATA
TCCGAAAACCAAATGAAGGTACTAATGGTCAGTGGAAGAAGGGATTTGTTCTTCATAAGTCAAAGGGTAAAGAAGCTTAC
GCTGAAGATTCAGTTATGGACCATCATTTCAGGAAGCCAGAAAATCATATAATGTCTCAGCTGGAGATCAATTTTAGAGA
CCTTGGCTGCCCAGGACATGATGGCAAGGGAGGGCAAGGTGGCCGTGGGTGTGCTGGA

Alignment

ORF - retro_mluc_691 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.09 %
• Parental protein coverage: 74.7 %
• Number of stop codons detected: 5
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  KSAAQA-AAQTNSNAAGKQLRKESQKERKNPLPSNAGVAD-KKEETQPPVAL-KKEVRGEMASYPGNFQI
          .S.AQA..AQTNSNAAGK.L.KESQKERKNPLPSN..VAD.K.E...P...L.KKE..........NF..
Retrocopy RSTAQA<TAQTNSNAAGK*LCKESQKERKNPLPSNIAVADKKEETQPPLWCLRKKE*HVLEENGINNFRV

Parental  GVSL--KRPERRPPRERRFEKPLEEKGEGGEFSVDRPIIDRPIRGRGGLGR----GRGGRGRGMGRGD-G
          .......RP.RRPPRER.FEK.LEEKGEGGEF.VDRPI..RPIRG.GGLGR....G..G.GRG.G....G
Retrocopy KGKIIDRRPQRRPPRER*FEKSLEEKGEGGEF*VDRPIVHRPIRGCGGLGRG*GPGERGMGRGDGFDSRG

Parental  FDSRGKREFDRHSGSDRSGLKHEDKRGGSGSHNWGTVKDELTDLEQPNVTEETPEGEEHPVADTESGKMW
          ............S.S..SGLKHE.K.GGSGSHNWGTVKDELTDLEQPNVTEE.PE.EEHPVA.TE.....
Retrocopy KREFNRHSVSDRSFSHYSGLKHEVKHGGSGSHNWGTVKDELTDLEQPNVTEEIPEVEEHPVANTENK---

Parental  ENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHH
          EN.VEEVKEEGPKEMTLDEWKAIQNKD.AKVEFNIRKPNEG..GQWKKGFVLHKSK..EA.AEDSVMDHH
Retrocopy ENKVEEVKEEGPKEMTLDEWKAIQNKDQAKVEFNIRKPNEGTNGQWKKGFVLHKSKGKEAYAEDSVMDHH

Parental  FRKPANDITSQLEINFGDLGRPGRGGRGGRGGRGRGG
          FRKP.N.I.SQLEINF.DLG.PG..G.GG.GGRG..G
Retrocopy FRKPENHIMSQLEINFRDLGCPGHDGKGGQGGRGCAG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_691 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 18 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000018538	1 retrocopy	retro_cfam_546,
Callithrix jacchus	ENSCJAG00000017440	2 retrocopies	retro_cjac_1207, retro_cjac_3015,
Homo sapiens	ENSG00000142864	3 retrocopies	retro_hsap_3056, retro_hsap_413, retro_hsap_4695,
Gorilla gorilla	ENSGGOG00000010396	1 retrocopy	retro_ggor_408,
Myotis lucifugus	ENSMLUG00000001424	1 retrocopy	retro_mluc_691 ,
Oryctolagus cuniculus	ENSOCUG00000008946	1 retrocopy	retro_ocun_1041,
Otolemur garnettii	ENSOGAG00000025884	1 retrocopy	retro_ogar_185,
Pongo abelii	ENSPPYG00000001256	1 retrocopy	retro_pabe_3790,
Pan troglodytes	ENSPTRG00000023560	2 retrocopies	retro_ptro_1985, retro_ptro_317,
Sorex araneus	ENSSARG00000000803	1 retrocopy	retro_sara_135,
Tupaia belangeri	ENSTBEG00000003689	4 retrocopies	retro_tbel_1004, retro_tbel_1331, retro_tbel_2427, retro_tbel_532,