RetrogeneDB ID: retro_mluc_608

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429769:26246186..26247371(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000004806
• Aliases: None
• Description: None

Sequence

>retro_mluc_608
TATGGTATCAGTTATCAGAGCAACAAATATGGGCAGCCCAAGTGAAGGCTGTGGTCAGCAGTCTGTCTATGGTGGATAGC
AGCTTAGCTATGGACAGCAGCAAAGCTCTTAGAATCCTCCTCAGGGCTATGGACATCAGAGCAGTACATCAGTAACAGTG
GAGGTGGCAGAAGGGGTGCTGGAGGTAACTATGGTCAAGATCAGTCCTCCATGAGTGGTGGCAACAGTGACAGCAGGTAT
GGCAATCAGGATTAGAGTGGAGGTGGCTAGGGGGAAGGCCAGCATGACTGTGTGGGACAAGGTCGGGGCAGTGGCAGTGG
TTACAACTGCAGCAGTGGTGACTATGAACCCAGAAGTCATGGAGGTGGCCATGGAGGCAGAAGTGGCATGGGCAGAAGTG
ACGTGGTGGCTTCAAAATATTTGTTGGCCTTCAGGACTAAGGATCACGTCATGACTCTGAACAGGATAATTTAAACACCA
CCATCTTCATGCAAGGCCTGGGTAAGAATGTTACAATTGAGTCTGTGGCTGATTACTTCAAGCAGACTGGTATTATTAAG
ACAAACTGAAAATAGGATAACCCATGTTTAATCTGTACATAGACAGGGAATGGAGCAAGCTGAAGGGAGAGGCAACCGTA
TCATTTAATGATCCACCTGGTGCTAAAGCAGCTATTGAATGGTTTGATGGTAAAGAATTATCTGGGAATCCTATCAAGGT
CTTATTTGCTATTTGGAAAGTAGATTTCAATTGGGTTGGTGGCAATGGTCATGGAGGCCAAGGGCGAGGAGGACCCATGG
GCCATGGAGGCTAGGTAGGTGATGACAGTAGTGATGGTGGCTGGGAAGGATTCCCAAGCAGAGGTTGTGGCAGTGGAGGA
CAGCAGCGAATTGGGGACTGGAAATGTCCTGATCCTACATGTGAGAACATGGACTTCTCTTGGAGGAATGAATGCAACCA
TGTAAGGCCCCTAAACCAGATGGTCTAGGACAGGGACCAGGAGGCTCTCATGTGGGGGATAGCTATGGAGATGATTGTTG
TGGTGGCAGAAGAGGCTATGATCAGAGCATCTACTGAAGCTGAGGTTGGGTCTTCAAAGGGGGCCGGGGTGGTGGGAACA
GAGGTGGCTTTAGCCCTGGCAAGATGGACTCTAGGAGTGACCACATATAGGATCACAGGGAGAGG

Alignment

ORF - retro_mluc_608 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.02 %
• Parental protein coverage: 78.59 %
• Number of stop codons detected: 10
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  YGSSSQSS-NYGQPPSGGYGQQSGYGGQQPSYGQQQSSYNPPQGYGQQN-QYNSSSGGGGGGGGGNYGQD
          YG.S.QS..N.G.P.S.G.GQQS.YGG.Q.SYGQQQSS.NPPQGYG.Q..QY.S.SGGG..G.GGNYGQD
Retrocopy YGISYQSN>NMGSP-SEGCGQQSVYGG*QLSYGQQQSS*NPPQGYGHQS<QYISNSGGGRRGAGGNYGQD

Parental  QSSMSGGSGG--YGNQDQSGGGGYGGGQQDRGGRGRGGGGGYNRSSGGYEPRGRGGGRGGRGGMGGSD-R
          QSSMSGG.....YGNQD.SGGG..G.GQ.D..G.GRG.G.GYN.SSG.YEPR..GGG.GGR.GMG.SD.R
Retrocopy QSSMSGGNSDSRYGNQD*SGGG*-GEGQHDCVGQGRGSGSGYNCSSGDYEPRSHGGGHGGRSGMGRSD<R

Parental  GGFNKFGGPRDQGSRHDSEQDNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTN-KKTGQPMINLYTDR
          GGF..F.G..D.GSRHDSEQDN..N.TIF.QGLG.NVTIESVADYFKQ.GIIKTN..K.G.PM.NLY.DR
Retrocopy GGFKIFVGLQD*GSRHDSEQDNL-NTTIFMQGLGKNVTIESVADYFKQTGIIKTN<LKIG*PMFNLYIDR

Parental  ETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRADFNRGGGNGRGGRGRGGPMGRGGYG
          E..KLKGEATVSF.DPP.AKAAI.WFDGKE.SGNPIKV.FA....DFN..GGNG.GG.GRGGPMG.GG..
Retrocopy EWSKLKGEATVSFNDPPGAKAAIEWFDGKELSGNPIKVLFAIWKVDFNWVGGNGHGGQGRGGPMGHGG*V

Parental  GGGSGGGGRGGFPSGGGGGGGQQRAGDWKCPNPTCENMNFSWRNECNQ-CKAPKPDGPGGGPGGSHMGKN
          G..S..GG..GFPS.G.G.GGQQR.GDWKCP.PTCENM.FSWRNECN..CKAPKPDG.G.GPGGSH.G..
Retrocopy GDDSSDGGWEGFPSRGCGSGGQQRIGDWKCPDPTCENMDFSWRNECNH<CKAPKPDGLGQGPGGSHVGDS

Parental  YGDDRRGGRGGYDRGGYRGRGGDRGGFRGGRGGGDRGGFGPGKMDSRGDHRQDRRER
          YGDD..GGR.GYD...Y...G....G.RGG...G.RGGF.PGKMDSR.DH..D.RER
Retrocopy YGDDCCGGRRGYDQSIY*S*GWVFKGGRGG---GNRGGFSPGKMDSRSDHI*DHRER

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_608 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000000968	1 retrocopy	retro_meug_1986,
Myotis lucifugus	ENSMLUG00000004806	3 retrocopies	retro_mluc_1934, retro_mluc_608 , retro_mluc_638,
Myotis lucifugus	ENSMLUG00000012058	1 retrocopy	retro_mluc_328,
Macaca mulatta	ENSMMUG00000019637	1 retrocopy	retro_mmul_153,
Mus musculus	ENSMUSG00000030795	2 retrocopies	retro_mmus_2710, retro_mmus_2952,
Rattus norvegicus	ENSRNOG00000023360	4 retrocopies	retro_rnor_1439, retro_rnor_2727, retro_rnor_2894, retro_rnor_913,