RetrogeneDB ID: retro_meug_1986

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold76992:3437..4289(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FUS
• Ensembl ID: ENSMEUG00000000968
• Aliases: None
• Description: fused in sarcoma [Source:HGNC Symbol;Acc:4010]

Sequence

>retro_meug_1986
GGTGGTTACAACCGTAGCAGTGGTGGCTATGAGCCCAGAGGTCGTGGAGGTGGCCGTGGAGGCAGAGGTGGCATGGGCAG
AAGTGACCGAGGTGGCTTCAATAAATTTGGTGGGCCCAGGGACCAAGGATCACGCCATGACTCTGAACAGGATAATTCTG
ATAATAATACCATCTTCGTCCAAGGCTTGGGTGAAAATGTTACCATTGAGTCCGTGGCAGATTACTTCAAGCAGATTGGC
ATTATTAAGACTAATAAGAAGACAGGGCAACCTATGATCAACTTGTATACAGACAGCGAGACAGGAAAGCTGAAAGGAGA
GGCTACAGTATCGTTTGATGATCCCCCCTCTGCCAAGGCAGCTATTGATTGGTTTGATGGTAAAGATTTTTCTGGGAACC
CCATTAAAGTCTCCTTTGCTACTCGAAGAGCAGACTTTAATAGAGGAGGTGGCAATGGTCGTGGTGGTCGTAGTCGTGGA
GGACCAATGGGCCGTGGAGGCTTTGGAGGTGGTGGCAGTGGTGGTGGTAGCAGAGGAGGATTCCCTAGTGGAGGTGGTGG
TGGTGGAGGGCAACAGAGAGCTGGAGATTGGAAGTGTCCTAATCCCACATGTGAAAATATGAACTTTTCTTGGAGAAACG
AGTGTAACCAGTGTAAAGCACCTAAACCTGATGGACCTGGAGGGGGCCCTGGAGGCTCTCACACGGGGGGTAATTTTGGA
GATGATCGGAGAGGTGGCAGAGGTGGCTATGACCGTGGAGGGTACCGAGGCAGAGGCGGGGACCGAGGGGGATTCCGAGG
GGGCCGGGGTGAAGGGGACAGAGGTGGCTTTGGACCTGGCAAGATGGATTCA

Alignment

ORF - retro_meug_1986 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.31 %
• Parental protein coverage: 55.15 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GGYNRSSGGYEPRGRGGGRGGRGGMGGSDRGGFNKFGGPRDQGSRHDSEQDNSDNNTIFVQGLGENVTIE
          GGYNRSSGGYEPRGRGGGRGGRGGMG.SDRGGFNKFGGPRDQGSRHDSEQDNSDNNTIFVQGLGENVTIE
Retrocopy GGYNRSSGGYEPRGRGGGRGGRGGMGRSDRGGFNKFGGPRDQGSRHDSEQDNSDNNTIFVQGLGENVTIE

Parental  SVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKDFSGNPIKVSFA
          SVADYFKQIGIIKTNKKTGQPMINLYTD.ETGKLKGEATVSFDDPPSAKAAIDWFDGKDFSGNPIKVSFA
Retrocopy SVADYFKQIGIIKTNKKTGQPMINLYTDSETGKLKGEATVSFDDPPSAKAAIDWFDGKDFSGNPIKVSFA

Parental  TRRADFNRGGGNGRGGRGRGGPMGRGGFGGGGSGGGSRGGFPSGGGGGGGQQRAGDWKCPNPICENMNFS
          TRRADFNRGGGNGRGGR.RGGPMGRGG.............FPSGGGGGGGQQRAGDWKCPNP.CENMNFS
Retrocopy TRRADFNRGGGNGRGGRSRGGPMGRGGXXXXXXXXXXXXXFPSGGGGGGGQQRAGDWKCPNPTCENMNFS

Parental  WRNECNQCKAPKPDGPGGGPGGSHMGGNFGDDRRGGRGGYDRGGYRGRGGDRGGFRGGRGGGDRGGFGPG
          WRNECNQCKAPKPDGPGGGPGGSH.GGNFGDDRRGGRGGYDRGGYRGRGGDRGGFRGGRG.GDRGGFGPG
Retrocopy WRNECNQCKAPKPDGPGGGPGGSHTGGNFGDDRRGGRGGYDRGGYRGRGGDRGGFRGGRGEGDRGGFGPG

Parental  KMDS
          KMDS
Retrocopy KMDS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1986 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1986 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000000968	1 retrocopy	retro_meug_1986 ,
Macropus eugenii	ENSMEUG00000008703	1 retrocopy	retro_meug_1424,
Myotis lucifugus	ENSMLUG00000004806	3 retrocopies	retro_mluc_1934, retro_mluc_608, retro_mluc_638,
Macaca mulatta	ENSMMUG00000019637	1 retrocopy	retro_mmul_153,
Mus musculus	ENSMUSG00000030795	2 retrocopies	retro_mmus_2710, retro_mmus_2952,
Rattus norvegicus	ENSRNOG00000023360	4 retrocopies	retro_rnor_1439, retro_rnor_2727, retro_rnor_2894, retro_rnor_913,