RetrogeneDB ID: retro_mluc_5

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429767:37824786..37826121(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000006790
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000010003
• Aliases: None
• Description: None

Sequence

>retro_mluc_5
TCGCCGCCAGGCTTCGAAGGCGCGCCTCCCCAGGATCGCCAGGACGGGAGCAGCAATGGGAACCAGCGCCTCCCCCACCT
CTCCTCGGACGGGCAACAACATCCCTACAGCCCCGCGCCGCCCCTCTCCCATACCGGAGTCGCCGAATACCAGCTACCAC
CCTACTTTCCACCTCCCTACCAGCCGCCGACTTATTCCCAGTCGGCAGACCCCTGCTCGCATCCGGGAGAAGCGTACGCT
GCCATCAACCCCCTGCACCAGCCGGCACCCGCCGGCAGTCAGCCGCAGGCCTGGCCCGGCCGCCAGAGCCAGGAGGCTGC
TGGCTTGCCCTCGCACCACGGGCGCCGGGCCGGCCTGCAACCCCATCTCTCCGGGCTGGACGGCCGCGCTGTGAGTGCCC
GCAGGGATGGCTTCCGCCGCTCGGACCTGCTGCTGCCCCGGGCGCACGACCTGGACGCAGCGGGGCTGGCGGAGAACCTG
GGCCTTCATGACATGGGGCAACAGATGGACGAGGAGCAGATCGTGGATGAGCAGCACCTGCTTCTGCATGATCAGACTGT
GATTCGCAACGATCCCATTTCAATGACCAACGATCCCTTGAGTCTCTCCTGTCAGAAGGAGCTGGTGGGGGCTGTGATGA
ACCCCAGTGAGGTCTTCTCCGTCCACGGAAGATTGTCCCTCCTGAGCTCCACGCCGAAATACATAGTGACAGTTGCTGAA
GTCCAGAGGCGATTGTCCCCGCCTGAGTGCTTAAATGCCTCATTACTGGGAGGTATTCTCAGAAGAGCCAGGTCTAAAGA
TGCATGCCAGTCCTTGCGGGAGGAGCTGGACAAGATGGGGCTGAACCTTCCAGCCGGCAGACGGAAGGCTACACGCGTCA
CCCTCCTGACTTCCTTAGTAGAAGGGGAGGCCGTTCGCTTGGCTCGGGACTTTGGGTATGTCTGTGAAGCCGAGTTTCCT
AGTAAATCGGTGGCCGAGTACTTAACCAGACCTCATCTTGGAGGACGGAATGAGATGGCAACGAGGAAGAACATGCTGCT
GGCCGCACAGCAAGTGTGTCAAGAATTCACGGACCTTCTCCACCAAGACCGAACACCCATCGAGAACAAACGGCCGGCCC
GGGTCCTAGGGGCGGACATTCAGAACTGCCTGTCTCACTTCAGCCTGGTGACCCACGGGTTTGGCAGCCAGGCCATCTGT
GCCGCCGTGTCTGCGATGCAGAACTACATAAAAGAGGCTTTGGTCATCATAGAGAAATCCAACATGAATCCCGGGGACCA
GAGTCCAGCCGATTCCAGCAAGACCTCGGAGAAGATGGAGAAGCATCGGAAATGA

Alignment

ORF - retro_mluc_5 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.28 %
• Parental protein coverage: 96.44 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  EDRQDGSSNGNPRLPHLSSAGQ-HLYSPAPPLSHTGVAEYQPPPYFPPPYQPLTYSQSTDPYSHLGEAYA
          .DRQDGSSNGN.RLPHLSS.GQ.H.YSPAPPLSHTGVAEYQ.PPYFPPPYQP.TYSQS.DP.SH.GEAYA
Retrocopy QDRQDGSSNGNQRLPHLSSDGQQHPYSPAPPLSHTGVAEYQLPPYFPPPYQPPTYSQSADPCSHPGEAYA

Parental  AINPLHQPAPAGSQPQAWPGRQSQEAAGLPSHHGRPAGLLPHLSGLDGGAMSARRDGFRRSDLLLPHAHA
          AINPLHQPAPAGSQPQAWPGRQSQEAAGLPSHHGR.AGL.PHLSGLDG.A.SARRDGFRRSDLLLP.AH.
Retrocopy AINPLHQPAPAGSQPQAWPGRQSQEAAGLPSHHGRRAGLQPHLSGLDGRAVSARRDGFRRSDLLLPRAHD

Parental  LEAAGLAENLGLHDMGQQMDEVQIVDEQHLLLHDQTVIRKGPISMTKNPLSLPCQKELVGAVMNPSEVFC
          L.AAGLAENLGLHDMGQQMDE.QIVDEQHLLLHDQTVIR..PISMT..PLSL.CQKELVGAVMNPSEVF.
Retrocopy LDAAGLAENLGLHDMGQQMDEEQIVDEQHLLLHDQTVIRNDPISMTNDPLSLSCQKELVGAVMNPSEVF-

Parental  SVPGRLSLLSSTSKYKVTVAEVQRRLSPPECLNASLLGGVLRRAKSKNGGRSLREKLDKIGLNLPAGRRK
          SV.GRLSLLSST.KY.VTVAEVQRRLSPPECLNASLLGG.LRRA.SK....SLRE.LDK.GLNLPAGRRK
Retrocopy SVHGRLSLLSSTPKYIVTVAEVQRRLSPPECLNASLLGGILRRARSKDACQSLREELDKMGLNLPAGRRK

Parental  AAHVTLLTSLVEGEAVHLARDFAYVCEAEFPSKPVAEYLTRPHLGGRNEMATRKNMLLAAQQVCKEFTDL
          A..VTLLTSLVEGEAV.LARDF.YVCEAEFPSK.VAEYLTRPHLGGRNEMATRKNMLLAAQQVC.EFTDL
Retrocopy ATRVTLLTSLVEGEAVRLARDFGYVCEAEFPSKSVAEYLTRPHLGGRNEMATRKNMLLAAQQVCQEFTDL

Parental  LNQDRTPNGNNRPAPVLEANIQNCLSHFSLITHGFGSQAICAAVSAMQNYIKEALVIIEKSYMNPGDQSP
          L.QDRTP..N.RPA.VL.A.IQNCLSHFSL.THGFGSQAICAAVSAMQNYIKEALVIIEKS.MNPGDQSP
Retrocopy LHQDRTPIENKRPARVLGADIQNCLSHFSLVTHGFGSQAICAAVSAMQNYIKEALVIIEKSNMNPGDQSP

Parental  ADSSKTLEKMEKHRK
          ADSSKT.EKMEKHRK
Retrocopy ADSSKTSEKMEKHRK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_5 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000011025	1 retrocopy	retro_chof_1226,
Macropus eugenii	ENSMEUG00000007703	1 retrocopy	retro_meug_166,
Myotis lucifugus	ENSMLUG00000010003	2 retrocopies	retro_mluc_284, retro_mluc_5 ,
Monodelphis domestica	ENSMODG00000016445	1 retrocopy	retro_mdom_728,
Otolemur garnettii	ENSOGAG00000033901	1 retrocopy	retro_ogar_1767,
Pan troglodytes	ENSPTRG00000013654	1 retrocopy	retro_ptro_1933,
Ictidomys tridecemlineatus	ENSSTOG00000014299	3 retrocopies	retro_itri_1741, retro_itri_1801, retro_itri_1813,
Tursiops truncatus	ENSTTRG00000005983	1 retrocopy	retro_ttru_535,