Parental gene:

TFAP2C, ENSMODG00000016445

Aliases:None
Description:transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma) [Source:HGNC Symbol;Acc:11744]
Organism:Opossum (Monodelphis domestica)
Coordinates:1:487628481..487637957(-)


>ENSMODG00000016445
ATGTTGTGGAAATTAGCCGACAATGTCAAGTACGAAGAGGATTGCGAGGATAGGCACGATGGGAACAGCAATGGGAACCC
CCGCCTCCCTCACCTCCCAGCGGTCAGCCAGCACCTTTACAGCCCCGCTGCCCCACCGCTTTCACATTCAGGGGCATCAG
ACTTCCAGCCGCCTTACTTTCCCCCGCCCTACCAGCCCTTGCCCTATTCACAGTCTGCTGACCCGTACTCCCACCTGGCT
GACCCGTTCTCCATCAACCCTCTGCATCAGCCTGCACCAGCTGCCAGTCAGCAACAGGCCTGGCCTAGCCGCCAGAACCA
GGAGCCAGCTGGCTTGAGCCACCACACAAGACCAGGCCTTGTCCCCCACCTCTCTGGGCTGGATGCTGGAGGACCTGGGG
CAAGGAGGGAGACCTACAGACGTTCAGAGCTGCTCCTACAGCCTCACGGCCACGGACTAGATGCAGCACTGGTGGAAAAT
CTGGGCTTGCACGACATGGCCCATCAAATGGAAGATGTCCAGAATGTGGAAGACCAACATTTACTGTTGCATGATCAGAC
AGTCATCAGGAAAGGTCCTATTTCAATGACCAAAAGCAACTCCTTGGGTATCCCCTGCCAGAAAGATGGGATGCTAGGAT
CAGTGGTTAATCATAATGAAGTATTTTGCTCTGTTCCTGGAAGACTTTCTCTTCTCAGCTCCACGTCGAAATATAAAGTG
ACTGTAGCTGAAGTCCAGCGAAGACTTTCCTCTCCTGAATGCTTAAATGCCTCCCTGTTAGGTGGTGTCTTGAGAAGAGC
CAAATCCAAGAATGGGGGCCGATCTCTGCGGGAAAAGTTGGACAAAATTGGTTTAAATCTTCCAGCTGGAAGAAGAAAAG
CTGCTAATGTGACATTATTGACTTCTTTGGTAGAAGGTGAAGCTGTGCATCTGGCCCGGGATTTTGGTTATGTCTGTGAA
ACTGAATTTCCTTCTAAAGCAGTGGCTGACTATTTAACCAGACCGCATTTAGGACGGAATGAAATCGGAACCAGAAAGAA
CATGCTACTTGCTGCTAAACAAATCTGTAAGGAATTCACAGATCTTCTCACTCAGGACCGGACTCCTCTTGGAAATGCTA
GGCCCAGCCCAGTTCTGGATCCTGCCATCCAAGGCTGCCTGACTCATTTCAGTCTAATAACGCATGGCTTTGGGAGTGCG
GCCATATGTGCAGCCATGACATCTGTCCAGAACTACCTAAATGAGGCATTAAAAATAGCAGACAAAACTTACATGAACAC
AGGCGACCAAAGTCCCACTGAGTCTAACAAAACTATTGAGAAAATGGATAAGCACCGGAAATAG

Library Parental gene expression (RPM)
SRP007412_brain 8 .22 RPM
SRP007412_cerebellum 0 .65 RPM
SRP007412_heart 1 .59 RPM
SRP007412_kidney 0 .00 RPM
SRP007412_liver 0 .00 RPM
SRP007412_testis 1 .18 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000011025 ortholog_one2one 1 retrogene
retro_chof_1226,
Macropus eugenii ENSMEUG00000007703 ortholog_one2one 1 retrogene
retro_meug_166,
Myotis lucifugus ENSMLUG00000010003 ortholog_one2many 2 retrogenes
retro_mluc_284, retro_mluc_5,
Otolemur garnettii ENSOGAG00000033901 ortholog_one2many 1 retrogene
retro_ogar_1767,
Pan troglodytes ENSPTRG00000013654 ortholog_one2one 1 retrogene
retro_ptro_1933,
Ictidomys tridecemlineatus ENSSTOG00000014299 ortholog_one2one 3 retrogenes
retro_itri_1741, retro_itri_1801, retro_itri_1813,
Tursiops truncatus ENSTTRG00000005983 ortholog_one2one 1 retrogene
retro_ttru_535,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mdom_728 84.49 70.69
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Download FASTA sequences of all ENSMODG00000016445 retrocopies