RetrogeneDB ID: retro_mluc_488

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: AAPE02070337:25..411(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SNX10
• Ensembl ID: ENSMLUG00000000285
• Aliases: None
• Description: None

Sequence

>retro_mluc_488
CTGCCAGAGCTTCATCTTAAAACCCTGTTTTTCACATGAACAATCGCCAGCATGTGGACCAGCGGCGTCAGGGTCTGGAA
GATTTCCTCAGACAGGTCCTACACAACGCGCTCCTGCTCTCAGACAGCAGCCTGCACCTCTTCTTGCAAAGCCATCTGAA
CTCGGAAGACATCGAGGCGTGCGTTTCTGGGCAGACCAAGTACTCGGTAGAGGAAGCAATTCACAAGTTCGCCTTGATGA
ACAGACGCTTCCCCGAAGAAGATGAAGCCGGAGAACAAGAAAACAATATAGATTATGGTTCAGAAAGTTCATCCTCCGGG
TTTGGCCACAGTAGTGATGACAGCAGTTCACATGGGTGTAACATGAGCACGGCTCCGCAGGAATCC

Alignment

ORF - retro_mluc_488 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.62 %
• Parental protein coverage: 57.08 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LPELPSKNLFF-NMNNRQHVDQRRQGLEDFLRKVLHNALLLSDSSLHLFLQSHLNSEDIEACVSGQTKYS
          LPEL..K.LFF..MNNRQHVDQRRQGLEDFLR.VLHNALLLSDSSLHLFLQSHLNSEDIEACVSGQTKYS
Retrocopy LPELHLKTLFF<HMNNRQHVDQRRQGLEDFLRQVLHNALLLSDSSLHLFLQSHLNSEDIEACVSGQTKYS

Parental  VEEAIHKFALMNRRFPEEDEAGEQENNIDYGSESSSSGFGHSSDDSSPHGCNMSTAPQES
          VEEAIHKFALMNRRFPEEDEAGEQENNIDYGSESSSSGFGHSSDDSS.HGCNMSTAPQES
Retrocopy VEEAIHKFALMNRRFPEEDEAGEQENNIDYGSESSSSGFGHSSDDSSSHGCNMSTAPQES

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_488 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000000291	2 retrocopies	retro_chof_1983, retro_chof_445,
Myotis lucifugus	ENSMLUG00000000285	1 retrocopy	retro_mluc_488 ,
Mus musculus	ENSMUSG00000038301	1 retrocopy	retro_mmus_2736,
Oryctolagus cuniculus	ENSOCUG00000004744	1 retrocopy	retro_ocun_918,