RetrogeneDB ID: retro_mluc_381

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429852:3910386..3911226(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000025302
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: AQP9
• Ensembl ID: ENSMLUG00000001108
• Aliases: None
• Description: None

Sequence

>retro_mluc_381
GCCACCATGCAATCTGAGGTACAGAGGAGACGCTTCAGGCAGAGACTGATGTTGAAGAGCAGTTTGGCTAAAGAAATACT
CTCCGAGTTCTTGGGCACATGTATAATGATCGTTCTCGGATGTGGCTCTATTGCCCAATCCGTCCTCAGTCGCGGAACTT
ATGGAGGAACCCTCGCTGTGAATGTTGGCTTTTCAGTAGCAGTCGGAATGGCCGTTTATGTGGCTGGGGGTGTCTCTGGT
GGCCACATCAACCCTGCTGTGTCTTTTGCAATGTGTCTCTTTGGACGGATGAAATGGTTCAAATTTCCTTTCTATGTGGG
AGCCCAGCTTTTCGGAGCCTTCACAGGGTCCGCAATCCTCTTTGGTGTTTACTATGATTCATTTATGTCCTTTGCTGATG
GAGAACTGTACATCGTGGGAGAAAATGCAACAGCACAGATTTTTGCAACATACCCAGCTCCGTATCTGTCTCTGGTAAAT
GGGTTTGCAGACCAAGTAGTGTCCACCATGTTCCTCCTCATGGTTATCTTTGCCATCTTTGACTCCAGAAACTGGAGCGT
CCCCAGAGGCCTAGAGCCCGTTGTCATCGCCCTCCTGATTTTGGTCCTTACTACCTCTTTGGAACTGAACTGTGGTTGTG
CCATGAATCCAGCTCGAGACCTAGGTCCCAGGCTTTTCACTGCTTTGGCGGGATGGGGGTTTGATGTCTTCAAAGCTGGA
AATTACTTCTGGTGGATTCCTATCGTGGGCCCTATGGTTGGTGCTGCCATGGGAGGCCTCATCTACGTTCTTTTCATTGA
AATCCACCATCCAAACCTGAATCCAGACTTTGAGGCAGAA

Alignment

ORF - retro_mluc_381 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.05 %
• Parental protein coverage: 88.55 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LSKSLTVAISTQLLSFLSFQVLGCGCVAQAVLSRGHFGGIVTINVGFAMAVVMAIYVTGGVSGGHINPAV
          L..SL...I....L......VLGCG..AQ.VLSRG..GG....NVGF..AV.MA.YV.GGVSGGHINPAV
Retrocopy LKSSLAKEILSEFLGTCIMIVLGCGSIAQSVLSRGTYGGTLAVNVGFSVAVGMAVYVAGGVSGGHINPAV

Parental  SFAMCLFGRMKWFKFPFYVGAQFLGAFVGSAILFGIYYDGIMSFADGKLLIVGENATAIIFATYPAPYLS
          SFAMCLFGRMKWFKFPFYVGAQ..GAF.GSAILFG.YYD..MSFADG.L.IVGENATA.IFATYPAPYLS
Retrocopy SFAMCLFGRMKWFKFPFYVGAQLFGAFTGSAILFGVYYDSFMSFADGELYIVGENATAQIFATYPAPYLS

Parental  LTNAFADQVMSTMFLLLVVFAIFDSRNWGVPKGLQPIAIGLLIIVLSSSLGLNCGCAMNPARDLSPRLFT
          L.N.FADQV.STMFLL.V.FAIFDSRNW.VP.GL.P..I.LLI.VL..SL.LNCGCAMNPARDL.PRLFT
Retrocopy LVNGFADQVVSTMFLLMVIFAIFDSRNWSVPRGLEPVVIALLILVLTTSLELNCGCAMNPARDLGPRLFT

Parental  ALAGWGFDVFRVGNNFWWIPVVAPMVGAAIGGLIYILLIEIHHPNPNPDFEAE
          ALAGWGFDVF..GN.FWWIP.V.PMVGAA.GGLIY.L.IEIHHPN.NPDFEAE
Retrocopy ALAGWGFDVFKAGNYFWWIPIVGPMVGAAMGGLIYVLFIEIHHPNLNPDFEAE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_381 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000013669	3 retrocopies	retro_meug_1850, retro_meug_533, retro_meug_674,
Myotis lucifugus	ENSMLUG00000001108	2 retrocopies	retro_mluc_381 , retro_mluc_580,