RetrogeneDB ID: retro_meug_1850

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold6553:29676..30204(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000010122
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: AQP9
• Ensembl ID: ENSMEUG00000013669
• Aliases: None
• Description: aquaporin 9 [Source:HGNC Symbol;Acc:643]

Sequence

>retro_meug_1850
CTTGGTTGTGGTTCTGTAGCCCAAACCGTCTTCAGCCAAGGGACTGCAGGTGGACCTGTGACCACGAATGTTGGCTTTGC
ACTGGCTATTGTAATGGCTTTTTATGTGTCAGGAGGTGTCTTTGGTGGTCACGTTAACCCAGCAGTGTCCTTTGCTATGT
GTCTCTATGGATGGATGAAATGGTTCAAATTCCCTTTCTATGTGGTAACCCAGTTCCTGGGAGCCTTTGTAGGGGCTGCA
ACCCTCTTTGGAGTTTACTACGATGCACTTAAGACTTTTGCTGGGGGAAAATTGATCATCACAGGAGAAAATGCAACAGC
ACAGATTTTTGCAACATATCCGATTAAATACTTGACTATAGGAAATGAATTTGCAGACCAGGTGATGTCTACCACTTTCC
TTCTCTTGGGTGTGTTTGCCATTTTTGATGAAAAAAACTGGAGGGTCCCCAAAGGCCTAGAACCAGTTGGCCTACTGATC
CTTGTCATTGCTTGCTCACTGGGAATGAACAATGGTTGTGCCATGAAC

Alignment

ORF - retro_meug_1850 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.52 %
• Parental protein coverage: 61.38 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LGCGSVAQTVLSRGTAGGPVTTNVGFAMAIVISLYVSGGVSGGHVNPAVSFAMCLYGRMKWFKFPFYVVA
          LGCGSVAQTV.S.GTAGGPVTTNVGFA.AIV...YVSGGV.GGHVNPAVSFAMCLYG.MKWFKFPFYVV.
Retrocopy LGCGSVAQTVFSQGTAGGPVTTNVGFALAIVMAFYVSGGVFGGHVNPAVSFAMCLYGWMKWFKFPFYVVT

Parental  QFLGAFVGAAVLFGVYYDAITTFAEGKLIVTGENATAQIFATYPLNYLTIGNEFADQVMCSTFLLFGVFA
          QFLGAFVGAA.LFGVYYDA..TFA.GKLI.TGENATAQIFATYP..YLTIGNEFADQVM..TFLL.GVFA
Retrocopy QFLGAFVGAATLFGVYYDALKTFAGGKLIITGENATAQIFATYPIKYLTIGNEFADQVMSTTFLLLGVFA

Parental  IFDEKNWRVPKGLEPVVVGLLILAIACSLGMNTGSAMN
          IFDEKNWRVPKGLEPV..GLLIL.IACSLGMN.G.AMN
Retrocopy IFDEKNWRVPKGLEPV--GLLILVIACSLGMNNGCAMN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1850 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1850 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000013669	3 retrocopies	retro_meug_1850 , retro_meug_533, retro_meug_674,
Myotis lucifugus	ENSMLUG00000001108	2 retrocopies	retro_mluc_381, retro_mluc_580,