RetrogeneDB ID: retro_mluc_2559

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430939:50489..52167(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000024155
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: MARVELD2
• Ensembl ID: ENSMLUG00000003819
• Aliases: None
• Description: None

Sequence

>retro_mluc_2559
ATGTCTTCAAAGGATGGGAGATCCAGGAATTGAGACAGGCACTACAATGACCTCCCCAGGGACTTGGCCCATGAAGATGG
CACCATAAGAACCCCCCAGACTCTCCGTGACAGTGAGCTGGCTGTGAGCGCTGATCCTTTGCCACCACCCCCTCTCCCAT
TACAGCCATCTTTTGGCCCTGACTTCTACTCAAGTGACACAGAGGAACTGGCCATAGCACCAGACCTCAAACCCGTAAGG
CGCTTCATCCCTGAGTCCTGGAAGTACTTCTTCAGAGGGAAGAAAAGGGACCCAGAATGGGATAAGCTGGCGTCAGACAT
CAGATACATCTCAGACTGAGTGGAGTGTTCGCCTCCATCCTCTCGAGGGAGACCAAACCACCACTCACCCCCCAACTCCG
ACAAAGATCCTTACCGAGGGTCAGAAGGAACCTTTAATTCCCAGAAAGAGGCTGAAGCGATGCTTTCCCAGGACCCCTAT
GGGTCTCTGGGTTGACACACACAAAGGGCTCTAACGTACAGTGAGAAGGTGGAGGCCTACAACCTGAGGTACTCCTACAT
GAAGTCGTGGCCTGGCCTGCTGAGAATCCTCGGGGTGGTGGAGCTGCTGCTGGGGGCGGGCGTCTTTGCCTGTGTCACAG
CTTACGTTCACAAGGACAGTGAGTGGTACAACATGTTTGGCTATTCCTCGCCCACGGCCATGGGAGGCTTTGGTGGCCTG
GGCAGTGCATATGGGGGCTACTACTACAGTGGCCCCAAAACTCCTTTTATACTCGTGGTTGCTGGATTAGCTTGGGTCAC
CACCATTATTATTCTGGTTCTTGGCATGTCCATGTATTATCAGATCATTCTTTTGGACTCTAACTGGTGGCCCCTGACTG
AGTCTGGAATTAACATTGCCTTGTTTATTTTGTATATGGCTGCAGGCATAGTCTATGTGAATGATATCAACCAAGGTGGA
CTCTGCTACTATCCAGTATTTAATACACCAATGAATGCAATGTTCTGTCGGGTAGAAGGAGGACAGACAGCAGCGATGGT
CTTCCTGTTTGTCACCATGATTGTTTATTCCATCAGTGCTTTGGTTTGCCTAAAGTTATGGAGGCATGAGGCAGCTCGGA
GACATAGAGAATACATGGAACAACAGGAGATAAGTGAGCCATCATTTCCATCGAAAAGAAAAATGTGTGAAATGGCCATC
GGCGGTGACAGACAGAGAGACCAAGAAGTTCATTTCAAAGAATTGAGACCAACAAGTATGAAACCTGAAATACTGAGTGG
ACATGTCCCCTCAGGCCACATTCCCAAACCTATCATGTTGCCTGACTATGTGGCAAAATACCCTGTGATTCGGACAGATG
ATGAATGGGAGCGCTCTAAGGCTGTGTTCCAAGACCAGTTTTCAGAGTACAAGGAGTTCTCTGCAGAAGTGCAGGCCGTC
TTGAGGAAGTTCGATGAGCTGGACACAGTGATGAGCAGACTGCCACATCATTCGGGAAACCAACAGGAATATGAGAGAAT
TTCAAGAATCCATGAAGAATTTAAGAAAAAAAAGAAGGACCCTACGTTTCTGGAAAAAAATAGAGCGCTGTGATTATCTA
AAGAATAAACTTTCTCACATAAAGCAAAGAATTCAAGAATATGATAAAGTAATGAATTGGGTTGTACAAGCTTATTCT

Alignment

ORF - retro_mluc_2559 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.14 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 3
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MSSKDGRSRNRDRHYNEVSRDLAHEDGTIRTLQTLRDSELAVSADPLPPPPLPLQPPFGPDFYSSDTEEP
          MSSKDGRSRN.DRHYN...RDLAHEDGTIRT.QTLRDSELAVSADPLPPPPLPLQP.FGPDFYSSDTEE.
Retrocopy MSSKDGRSRN*DRHYNDLPRDLAHEDGTIRTPQTLRDSELAVSADPLPPPPLPLQPSFGPDFYSSDTEEL

Parental  AIAPDLKPVRRFVPESWKHFFRGKKKDPEWDKPVSDIRYISDGVECSPPSSPGRQNHHSPSNSDKDPYGG
          AIAPDLKPVRRF.PESWK.FFRGKK.DPEWDK..SDIRYISD.VECSPPSS.GR.NHHSP.NSDKDPY.G
Retrocopy AIAPDLKPVRRFIPESWKYFFRGKKRDPEWDKLASDIRYISD*VECSPPSSRGRPNHHSPPNSDKDPYRG

Parental  SEGTFNSRKEAEAMLPQDPYGSLGRHTQTALTYSEKVEAYNLRYSYMKSWPGLLRILGVVELLLGAGVFA
          SEGTFNS.KEAEAML.QDPYGSLG.HTQ.ALTYSEKVEAYNLRYSYMKSWPGLLRILGVVELLLGAGVFA
Retrocopy SEGTFNSQKEAEAMLSQDPYGSLG*HTQRALTYSEKVEAYNLRYSYMKSWPGLLRILGVVELLLGAGVFA

Parental  CVTAYIHKDSEWYNMFGYSSPTAMGGFGGLGSAYGGYYYSGPKTPFILVVAGLAWITTIIILVLGMSMYY
          CVTAY.HKDSEWYNMFGYSSPTAMGGFGGLGSAYGGYYYSGPKTPFILVVAGLAW.TTIIILVLGMSMYY
Retrocopy CVTAYVHKDSEWYNMFGYSSPTAMGGFGGLGSAYGGYYYSGPKTPFILVVAGLAWVTTIIILVLGMSMYY

Parental  RTILLDSNWWPLTEFGINIALFILYMAAAIVYVNDINRGGLCYYPVFNTPMNAMFCRVEGGQTAAMVFLF
          ..ILLDSNWWPLTE.GINIALFILYMAA.IVYVNDIN.GGLCYYPVFNTPMNAMFCRVEGGQTAAMVFLF
Retrocopy QIILLDSNWWPLTESGINIALFILYMAAGIVYVNDINQGGLCYYPVFNTPMNAMFCRVEGGQTAAMVFLF

Parental  VTMIVYLISALVCLKLWRHEAARRHREYMEQQEISEPSFPSKRKMCEMAIGGDRQRDQEVHFKELRPTNM
          VTMIVY.ISALVCLKLWRHEAARRHREYMEQQEISEPSFPSKRKMCEMAIGGDRQRDQEVHFKELRPT.M
Retrocopy VTMIVYSISALVCLKLWRHEAARRHREYMEQQEISEPSFPSKRKMCEMAIGGDRQRDQEVHFKELRPTSM

Parental  KPEILSGHIPSGHIPKPIMLPDYVAKYPVIRTDEERERYKAVFQDQFSEYKELSAEVQAVLRKFDELDAV
          KPEILSGH.PSGHIPKPIMLPDYVAKYPVIRTD.E.ER.KAVFQDQFSEYKE.SAEVQAVLRKFDELD.V
Retrocopy KPEILSGHVPSGHIPKPIMLPDYVAKYPVIRTDDEWERSKAVFQDQFSEYKEFSAEVQAVLRKFDELDTV

Parental  MSRLPHHSGNQQEHERISRIHEEFKKKKKDPTFLEKK-ERCDYLKNKLSHIKQRIQEYDKVMNWDVQGYS
          MSRLPHHSGNQQE.ERISRIHEEFK...KDPTFLEK..ERCDYLKNKLSHIKQRIQEYDKVMNW.VQ.YS
Retrocopy MSRLPHHSGNQQEYERISRIHEEFKXXXKDPTFLEKN>ERCDYLKNKLSHIKQRIQEYDKVMNWVVQAYS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2559 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000002123	1 retrocopy	retro_mluc_248,
Myotis lucifugus	ENSMLUG00000003819	3 retrocopies	retro_mluc_2539, retro_mluc_2558, retro_mluc_2559 ,