RetrogeneDB ID: retro_mluc_2539

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430803:54499..56063(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000028042
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: MARVELD2
• Ensembl ID: ENSMLUG00000003819
• Aliases: None
• Description: None

Sequence

>retro_mluc_2539
ATGTCTTCAAAGGATGGGAGATCCAGGAATTGAGACAGGCACTGCAATGACCTCCCCAGGGACTTGGCCCATGAAGATGG
CACCATAAGAACCCTCCAGACTCTCCGTGACAGTGAGCTGGCTGTGAGCGCTGATCCTTTGCCACCACCCCCTCTCCCAT
TACAGCCACCTTTTGGCCCTGACTTCTACTCAAGTGACACAGAGGAACCGGCCATAGCACCAGACCTCAAACCCGTAAGG
CGCTTCGTCCCTGAGTCCTGGAAGTACTTCTTCAGAGGGAAGAAAAGGGACCCAGAATGGGATAAGCCGGCGTCAGACAT
CAGATACATCTCAGACTGAGTGGAGTGTTCGCCTCCATCCTCTCGAGGGAGACCAAACCACCACTCACCCCCCAACTCCG
ACAAAGATCCTTACGGAGGGTCAGAAGGAATCTTTAATTCCCAGAAAGAGGCTGAAGCGATGCTTTCCCAGGATCCCTAT
GGGTCTCTGGGCCGACATACGGCTCTAATGTACAGTGAGAAGGTGGAGGCCTACAACCTGAGGTACTCCTACATGAAGTT
ATGGCCTGGCCTGCTGAGAATCCTCGGGGTGGTGGAGCTGCTGCTGGGGGTGGGCGTCTTCACCTGTGTCACAGCTTACG
TTCACAAGGACAGTGAGTGGTACAACATGTTTGGCTATTCCCCGCCCACGGCCATGGGAGGCTTTGGTGGCCTGGGCAGT
GCATATGGGGGCTACTACTACAGTGGCCCCAAAACTCCTTTTATACTCGTGGTTGCTGGATTAGCTTGGGTCACCACCAT
TATTATTCTGGTTCTTGGCATGTCCATGTATTATCAGACCATTCTTTTGGACTCTAACTGGTGGCCCCTGACTGAGTCTG
GAATTAACATTGCCTTGTTTATTTTGTATATGGCTGCAGCCATAGTCTATGTGAATGATATCAACCAAGGTGGACTCTGC
TACTATCCAGGATTTAATACACCAATGAATGCCATGTTCTGTCGGGTAGAAGGAGGACAGGCAGCAACGATGGTCTTCCT
GTTTGTCACCATGATTGTTTATTCCATCAGTGCTTTGGTTTGCCTAAAGTTATGGAGGCATGAGGCAGCTCGGAGACATA
GAGAATACATGGAACAACAGGAGATAAGTGAGCCATCATTTCCATCGAAAAGAAAAACGTGAAATGGCCATCGGTGGTGA
CAGACAGAGAGACCAAGAAGTTCATTTCAAAGAATTGAGACCAACAAGTATGAAACCTGAAATACTGAGTGGACATGTCC
CCTCAGGCCACATTCTCAAACCTATCATGTTGCCTGACTATGTGGCAAAATACCCTGTGATTCGGACAGATGATGAATGG
GAGCGCTCTAAGGCTGTGTTCCAAGACCAGTTTTCAGAGTACAAGGAGTTCTCTGCAGAAGTGCAGGCCGTCTTGAGGAA
GTTCGATGAGCTGGACGCAGTGATGAGCAGACTGCCACATCATTCGGGAAACCAACAGGAACATGAGAGAATTTCAAGAA
TCCATGAAGAATTTAAGAAAAAAAAGAAGGACCCTACGTTTCTG

Alignment

ORF - retro_mluc_2539 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.43 %
• Parental protein coverage: 93.74 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MSSKDGRSRNRDRHYNEVSRDLAHEDGTIRTLQTLRDSELAVSADPLPPPPLPLQPPFGPDFYSSDTEEP
          MSSKDGRSRN.DRH.N...RDLAHEDGTIRTLQTLRDSELAVSADPLPPPPLPLQPPFGPDFYSSDTEEP
Retrocopy MSSKDGRSRN*DRHCNDLPRDLAHEDGTIRTLQTLRDSELAVSADPLPPPPLPLQPPFGPDFYSSDTEEP

Parental  AIAPDLKPVRRFVPESWKHFFRGKKKDPEWDKPVSDIRYISDGVECSPPSSPGRQNHHSPSNSDKDPYGG
          AIAPDLKPVRRFVPESWK.FFRGKK.DPEWDKP.SDIRYISD.VECSPPSS.GR.NHHSP.NSDKDPYGG
Retrocopy AIAPDLKPVRRFVPESWKYFFRGKKRDPEWDKPASDIRYISD*VECSPPSSRGRPNHHSPPNSDKDPYGG

Parental  SEGTFNSRKEAEAMLPQDPYGSLGRHTQTALTYSEKVEAYNLRYSYMKSWPGLLRILGVVELLLGAGVFA
          SEG.FNS.KEAEAML.QDPYGSLGRHT..AL.YSEKVEAYNLRYSYMK.WPGLLRILGVVELLLG.GVF.
Retrocopy SEGIFNSQKEAEAMLSQDPYGSLGRHT--ALMYSEKVEAYNLRYSYMKLWPGLLRILGVVELLLGVGVFT

Parental  CVTAYIHKDSEWYNMFGYSSPTAMGGFGGLGSAYGGYYYSGPKTPFILVVAGLAWITTIIILVLGMSMYY
          CVTAY.HKDSEWYNMFGYS.PTAMGGFGGLGSAYGGYYYSGPKTPFILVVAGLAW.TTIIILVLGMSMYY
Retrocopy CVTAYVHKDSEWYNMFGYSPPTAMGGFGGLGSAYGGYYYSGPKTPFILVVAGLAWVTTIIILVLGMSMYY

Parental  RTILLDSNWWPLTEFGINIALFILYMAAAIVYVNDINRGGLCYYPVFNTPMNAMFCRVEGGQTAAMVFLF
          .TILLDSNWWPLTE.GINIALFILYMAAAIVYVNDIN.GGLCYYP.FNTPMNAMFCRVEGGQ.A.MVFLF
Retrocopy QTILLDSNWWPLTESGINIALFILYMAAAIVYVNDINQGGLCYYPGFNTPMNAMFCRVEGGQAATMVFLF

Parental  VTMIVYLISALVCLKLWRHEAARRHREYMEQQEISEPSFPS-KRKMCEMAIGGDRQRDQEVHFKELRPTN
          VTMIVY.ISALVCLKLWRHEAARRHREYMEQQEISEPSFPS.K.K..EMAIGGDRQRDQEVHFKELRPT.
Retrocopy VTMIVYSISALVCLKLWRHEAARRHREYMEQQEISEPSFPS>KEKR-EMAIGGDRQRDQEVHFKELRPTS

Parental  MKPEILSGHIPSGHIPKPIMLPDYVAKYPVIRTDEERERYKAVFQDQFSEYKELSAEVQAVLRKFDELDA
          MKPEILSGH.PSGHI.KPIMLPDYVAKYPVIRTD.E.ER.KAVFQDQFSEYKE.SAEVQAVLRKFDELDA
Retrocopy MKPEILSGHVPSGHILKPIMLPDYVAKYPVIRTDDEWERSKAVFQDQFSEYKEFSAEVQAVLRKFDELDA

Parental  VMSRLPHHSGNQQEHERISRIHEEFKKKKKDPTFL
          VMSRLPHHSGNQQEHERISRIHEEFK...KDPTFL
Retrocopy VMSRLPHHSGNQQEHERISRIHEEFKXXXKDPTFL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2539 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000002123	1 retrocopy	retro_mluc_248,
Myotis lucifugus	ENSMLUG00000003819	3 retrocopies	retro_mluc_2539 , retro_mluc_2558, retro_mluc_2559,