RetrogeneDB ID: retro_mluc_2525

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430711:74596..75111(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000000890
• Aliases: None
• Description: None

Sequence

>retro_mluc_2525
CAGCAAACACAGAAAACCAAAGGGGGGGGGGGGGAAGGCTCAGAGCATTCCTGCCAGAAAGAGAAGACAAGGTGGCCTCT
CATTGGAAGAAGAGGAAGAGGAGCATGTCAGTGGGGAATCTGGAGGAAGCAGCAATGAGGAGGAAGACACAGCTGCAGAG
CAAGAAGGCACCAGGTCCGAGGATGCAAGGGAAAAGGAGGATGGGCTGTGGGCCAGCTTCCTCAACGATGTGGCACCAAA
ATCAAAAGTGCCCTTGAGTCTACAAGTTAAAAAAAAGAGAAGAGACTGAAGAGACTACTTCAAATGAACTGTTGGTCAAA
GCAGAAGAGCTAGAGAAACCTAAAGAAAAAGTTAAAATCATCCAAGTGTTTGATTTTACTGGTGAAGAAGTCAGGGTGAC
TGAGGAAGTGGATTATTACATCTAAATAGGCCAAATCCTTCTTCGAGCAAAATGAGAAAGAAAAACCACAGACTAATGTC
CCTTCAATTCTGGCATCATCCCTGCTGGGTCAGGA

Alignment

ORF - retro_mluc_2525 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.89 %
• Parental protein coverage: 80.65 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  EQTQKTKGKKR-KAQSIPARKRKQGGLSLEEEEEEDVSGESGGSSNEEEDTAAEQEGGTRSEDARKKKED
          .QTQKTK.....KAQSIPARKR.QGGLSLEEEEEE.VSGESGGSSNEEEDTAAEQEG.TRSEDAR..KED
Retrocopy QQTQKTKXXXX>KAQSIPARKRRQGGLSLEEEEEEHVSGESGGSSNEEEDTAAEQEG-TRSEDAR-EKED

Parental  ELWASFLNDVGPKSKVPSSPQV-KKREETEETSSNKLLVKAEELEKPKETEKVKITKVFDFAGEEVRVTK
          .LWASFLNDV.PKSKVP.S.QV....EETEET.SN.LLVKAEELEKPK..EKVKI..VFDF.GEEVRVT.
Retrocopy GLWASFLNDVAPKSKVPLSLQV>XXXEETEETTSNELLVKAEELEKPK--EKVKIIQVFDFTGEEVRVTE

Parental  EVD-ATSKEAKSFLKQNEKEKPQTNIPSTLAS-LPAGSG
          EVD..TSK.AKSF..QNEKEKPQTN.PS.LAS..PAGSG
Retrocopy EVD>ITSK*AKSFFEQNEKEKPQTNVPSILAS<IPAGSG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2525 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000000695	1 retrocopy	retro_cpor_465,
Dasypus novemcinctus	ENSDNOG00000013266	2 retrocopies	retro_dnov_2442, retro_dnov_2546,
Echinops telfairi	ENSETEG00000016429	1 retrocopy	retro_etel_1574,
Myotis lucifugus	ENSMLUG00000000890	1 retrocopy	retro_mluc_2525 ,
Rattus norvegicus	ENSRNOG00000019326	1 retrocopy	retro_rnor_2289,
Ictidomys tridecemlineatus	ENSSTOG00000004124	2 retrocopies	retro_itri_1117, retro_itri_1815,
Tupaia belangeri	ENSTBEG00000015362	2 retrocopies	retro_tbel_1305, retro_tbel_2189,
Tursiops truncatus	ENSTTRG00000001215	1 retrocopy	retro_ttru_1385,