RetrogeneDB ID: retro_mluc_2372

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430272:88848..89330(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000026920
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: LAMTOR1
• Ensembl ID: ENSMLUG00000014117
• Aliases: None
• Description: None

Sequence

>retro_mluc_2372
ATGGGGTACTGCTACAGCAGTGAGAACGAGGACTCAGACCAGGACCCAGAGGAGCGGAAGCTGCTGCTGGACCCTAGCAG
CTCCCCACCAAAGCCCTCAGTGGAGCCGAGCCCAATCCCCACAGCCTGCCTTCCGCTCGCACAGATGAGCAGGCCCTGCT
CTCCTCCATTCTTGCCAAGACAGCCAGCAACGTCATTGACGCGTCTGCTGCAGACTCCCAGGGCATGGAGCGGCATGAGT
ACGTGGACCGGGCAAGGCAGTACAGCACCCGCTTGGCGGTGCTGAGCAGCAGCCTGACCCATCGGAAGCAGCTGCCGCCA
CTGCCATCTCTCACCAGTCAGCCCCACCAAGTGCTGGCCAGCGAACCCGTCCCCTTCTCCGACCCGCAGCAGGTCTCCAG
AATAGCTGCTTCTGCCCACAGTGCGCTTCCTCAGATTCGTGTGGATGCGAGAGAGGAGCTGGTTGTACAGTTTGGGATCC
CA

Alignment

ORF - retro_mluc_2372 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.51 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MGCCYSSENEDSDQDREERKLLLDPSSPP-TKALNGAEPNYHSLPSARTDEQALLSSILAKTASNIIDVS
          MG.CYSSENEDSDQD.EERKLLLDPSS.P.TKAL.GAEPN.HSLPSARTDEQALLSSILAKTASN.ID.S
Retrocopy MGYCYSSENEDSDQDPEERKLLLDPSSSP<TKALSGAEPNPHSLPSARTDEQALLSSILAKTASNVIDAS

Parental  AADSQGMEQHEYMDRARQYSTRLAVLSSSLTHWKKLPPLPSLTSQPHQVLASEPIPFSDLQQVSRIAAYA
          AADSQGME.HEY.DRARQYSTRLAVLSSSLTH.K.LPPLPSLTSQPHQVLASEP.PFSD.QQVSRIAA.A
Retrocopy AADSQGMERHEYVDRARQYSTRLAVLSSSLTHRKQLPPLPSLTSQPHQVLASEPVPFSDPQQVSRIAASA

Parental  YSALSQIRVDAREELVVQFGIP
          .SAL.QIRVDAREELVVQFGIP
Retrocopy HSALPQIRVDAREELVVQFGIP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2372 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 8 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000010854	2 retrocopies	retro_amel_1176, retro_amel_436,
Canis familiaris	ENSCAFG00000005788	1 retrocopy	retro_cfam_1962,
Echinops telfairi	ENSETEG00000010979	1 retrocopy	retro_etel_1005,
Felis catus	ENSFCAG00000005320	2 retrocopies	retro_fcat_142, retro_fcat_496,
Macropus eugenii	ENSMEUG00000003560	1 retrocopy	retro_meug_17,
Myotis lucifugus	ENSMLUG00000014117	1 retrocopy	retro_mluc_2372 ,
Mustela putorius furo	ENSMPUG00000010289	3 retrocopies	retro_mputfur_1178, retro_mputfur_270, retro_mputfur_455,
Tarsius syrichta	ENSTSYG00000014730	2 retrocopies	retro_tsyr_1324, retro_tsyr_33,