RetrogeneDB ID: retro_mluc_2354

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430241:611494..612030(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000015670
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: SLC35A3
• Ensembl ID: ENSMLUG00000001147
• Aliases: None
• Description: None

Sequence

>retro_mluc_2354
CTGTCTGCCAACCTCAAATACCTTTCCTTGGGGATTCTGGTCTTTCAGACGACCAGCCTGGTGCTCACGATGCGCTACTC
CAGGACTTTAAAGGAGAAGGGGCCTTGGTACCTGTCCTCCATGGCTGTGGTTGTGGCTGAGATTCTGAAGATAATGGCCT
GCATTCTATTAGTCTACAAAGACAGCCAATGTAGTCTGAGAGCACTGAATCGAATACTGCGGGATGAGATCCTTAACAAG
CCTATGGAAATGATCAAACTTGCTATTCCATCCGGGATATACACTCTTCAGAACAACCTGCTCTACGTGCTACTGTCCAA
TCTCGACGCAGCCACCTACCAGGCCACGTATCAGCTGAAAATCCTTACGATGGCACTGTTCTCTGTGTCTATACTGGGTA
AAAAGCTGGGTGTGTACCAGTGCAGTGGCTCTCCCTGATGATTCTGATGGCCGGAGTGGCTTTTGTACAGTGGCCTTCGG
ATGCCCAGGAGCTGGACTCGAAGGCGCTCTCGGCCAGCTCGCAGTTCGTGGGCCTC

Alignment

ORF - retro_mluc_2354 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.33 %
• Parental protein coverage: 54.29 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MSANLKYLSLGILVFQTTSLVLTMRYSRTFKEEGPRYLSSTAVVVAEILKIMACIVLVYKDSQCSLRALN
          .SANLKYLSLGILVFQTTSLVLTMRYSRT.KE.GP.YLSS.AVVVAEILKIMACI.LVYKDSQCSLRALN
Retrocopy LSANLKYLSLGILVFQTTSLVLTMRYSRTLKEKGPWYLSSMAVVVAEILKIMACILLVYKDSQCSLRALN

Parental  RILRDEILNKPMETIKLAIPSGIYTLQNNLLYVALSNLDAATYQVTYQLKILTTALFSVSML-GKKLGVY
          RILRDEILNKPME.IKLAIPSGIYTLQNNLLYV.LSNLDAATYQ.TYQLKILT.ALFSVS.L.G.K.G..
Retrocopy RILRDEILNKPMEMIKLAIPSGIYTLQNNLLYVLLSNLDAATYQATYQLKILTMALFSVSIL<G*KAGCV

Parental  --QWLSLVILMAGVAFVQWPSDTQELDSKALSAGSQFVGL
          ..QWLSL.ILMAGVAFVQWPSD.QELDSKALSA.SQFVGL
Retrocopy PVQWLSLMILMAGVAFVQWPSDAQELDSKALSASSQFVGL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2354 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000000695	1 retrocopy	retro_chof_37,
Myotis lucifugus	ENSMLUG00000001147	2 retrocopies	retro_mluc_1795, retro_mluc_2354 ,