RetrogeneDB ID: retro_mluc_1795

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429912:2572391..2572887(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SLC35A3
• Ensembl ID: ENSMLUG00000001147
• Aliases: None
• Description: None

Sequence

>retro_mluc_1795
ATGGCCGGAGTGGCTTTCGTACAGTGGCCCTCGGGTGCCCAGGAGCTGCACCCGAAGGCGCTCTCGGCCGGCTCGCAGTT
CGTGGGCCTCATGGCCGTGCTCACGGCCTGCTTTGCCAGTGCCTTCGCTGGGGTGTGCTTTGAGAAAATCATAAAAGAAA
CCAAGCAGTCGGTGTGGATCAGAAACATTCAACTGGGTTTCTTCGGGAGCGTATTTGGCTCGATGGGCGTGTACGTGTAT
GAAGGAGAACTGGTATCACAGAACGGGTTTTTTCCAGGGCTGCAACCGACTCACCTGGGCAGTTGTTGCGCTTCAGGCAC
TGGGGGGCCTTGTCATAGCGACTGTTAGAAAGCATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCCATAATA
TTATCGACACTGATATCCTACTTTTGGCTACAAGATTCTGTGCCAACCAGTGTCTTCTTCCTCGGAGCCGTCCTTGTAAT
AGCAGCTACTTTCATA

Alignment

ORF - retro_mluc_1795 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.16 %
• Parental protein coverage: 50.61 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MAGVAFVQWPSDTQELDSKALSAGSQFVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQLGFFGS
          MAGVAFVQWPS..QEL..KALSAGSQFVGLMAVLTACF.S.FAGV.FEKI.KETKQSVWIRNIQLGFFGS
Retrocopy MAGVAFVQWPSGAQELHPKALSAGSQFVGLMAVLTACFASAFAGVCFEKIIKETKQSVWIRNIQLGFFGS

Parental  VFGLMGVYVYDGELVSQN-GFFQGYNRLTWAVVALQALGGLVIAAVIKYADNILKGFATSLSIILSTLIS
          VFG.MGVYVY.GELVSQN.GFFQG.NRLTWAVVALQALGGLVIA.V.K.ADNILKGFATSLSIILSTLIS
Retrocopy VFGSMGVYVYEGELVSQN>GFFQGCNRLTWAVVALQALGGLVIATVRKHADNILKGFATSLSIILSTLIS

Parental  YFWLQDFVPTSVFFLGAILVIAATFL
          YFWLQD.VPTSVFFLGA.LVIAATF.
Retrocopy YFWLQDSVPTSVFFLGAVLVIAATFI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1795 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000000695	1 retrocopy	retro_chof_37,
Myotis lucifugus	ENSMLUG00000001147	2 retrocopies	retro_mluc_1795 , retro_mluc_2354,