RetrogeneDB ID: retro_mluc_2223

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430123:689149..689800(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000002464
• Aliases: None
• Description: Annexin [Source:UniProtKB/TrEMBL;Acc:G1NXX1]

Sequence

>retro_mluc_2223
ATGTCTACTGTTCAAGAAATTCTGTGAAAGCTCAGCTCGGAGGGTGATCACTCCACACCTATAAGTTTTTATGGGTCAGT
CAAAGTCTACCCCAACTTGGAAGCCCAGCGGGAAGCTTTGAACATTGAAATGGCCGTCAAGACCAAAGTTGTTGATGAGG
TCACCATTGTCAACATTTTGTCCAACCACAGCAATGAACAGAGACAGGATATTGCCTTCACCTACCAGACGATCAAAAAG
GAACTTGCATCAGCACTAAAGTCAGCCTTGTCCAGCCACCTGGAGACCGTGATTCTGGGCCTCTAGAAAACACGTGCTCG
GTACGATGCTTCCGAGCTGAAGGCCTCCATGGAGGGGCTGGGGACTGATGAGGACTCTCTCACCGAGATCATCTTCTCAA
GGACCAACCAAGAGCTATGGGAAATTAACAGAGTCTACAAGACTGATCTGGAGAAGGACATTATTTCCAACACATCTGGT
GACTTCTGCCAGCTGATGGTTACCCTCGCAAAGGGTAGAAGAGCAGAAGATGGCTCCATCATCGATTATGAACTGATTGA
TCAAGACGTCTGGGATCTCTATGATGCTGGGGTGAAGAGGAAAGGAACTGATGTTCCCAAGTGGATCAGCATCATGACCG
AGCAGAGCGTG

Alignment

ORF - retro_mluc_2223 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.98 %
• Parental protein coverage: 65.49 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSTVHEILCKLSLEGEHSTPVSAYGSVKAYPNFDADRDALNIETAIKTKGVDEVTIVNILTNRSNEQRQD
          MSTV.EIL.KLS.EG.HSTP.S.YGSVK.YPN..A.R.ALNIE.A.KTK.VDEVTIVNIL.N.SNEQRQD
Retrocopy MSTVQEIL*KLSSEGDHSTPISFYGSVKVYPNLEAQREALNIEMAVKTKVVDEVTIVNILSNHSNEQRQD

Parental  IAFAYQRRTKKELASALKSALSGHLETVILGLLKTPAQYDASELKASMKGLGTDEDSLIEIICSRTNQEL
          IAF.YQ...KKELASALKSALS.HLETVILGL.KT.A.YDASELKASM.GLGTDEDSL.EII.SRTNQEL
Retrocopy IAFTYQT-IKKELASALKSALSSHLETVILGL*KTRARYDASELKASMEGLGTDEDSLTEIIFSRTNQEL

Parental  QEINRVYKEMYKTDLEKDIISDTSGDFRKLMVALAKGRRAEDGSVIDYELIDQDARDLYDAGVKRKGTDV
          .EINRV....YKTDLEKDIIS.TSGDF..LMV.LAKGRRAEDGS.IDYELIDQD..DLYDAGVKRKGTDV
Retrocopy WEINRV----YKTDLEKDIISNTSGDFCQLMVTLAKGRRAEDGSIIDYELIDQDVWDLYDAGVKRKGTDV

Parental  PKWISIMTERSV
          PKWISIMTE.SV
Retrocopy PKWISIMTEQSV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2223 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 17 parental genes, and 35 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000016686	3 retrocopies	retro_cfam_1631, retro_cfam_367, retro_cfam_707,
Choloepus hoffmanni	ENSCHOG00000012143	3 retrocopies	retro_chof_1028, retro_chof_1965, retro_chof_815,
Felis catus	ENSFCAG00000007862	2 retrocopies	retro_fcat_594, retro_fcat_709,
Homo sapiens	ENSG00000182718	3 retrocopies	retro_hsap_3114, retro_hsap_4150, retro_hsap_580,
Gorilla gorilla	ENSGGOG00000009738	3 retrocopies	retro_ggor_2137, retro_ggor_2788, retro_ggor_515,
Macropus eugenii	ENSMEUG00000008980	3 retrocopies	retro_meug_1000, retro_meug_312, retro_meug_389,
Myotis lucifugus	ENSMLUG00000002464	3 retrocopies	retro_mluc_1569, retro_mluc_2223 , retro_mluc_2431,
Monodelphis domestica	ENSMODG00000011604	1 retrocopy	retro_mdom_1471,
Mustela putorius furo	ENSMPUG00000000762	2 retrocopies	retro_mputfur_73, retro_mputfur_79,
Nomascus leucogenys	ENSNLEG00000011678	2 retrocopies	retro_nleu_769, retro_nleu_802,
Otolemur garnettii	ENSOGAG00000009952	1 retrocopy	retro_ogar_3510,
Pongo abelii	ENSPPYG00000006526	2 retrocopies	retro_pabe_2572, retro_pabe_607,
Pan troglodytes	ENSPTRG00000007132	2 retrocopies	retro_ptro_2106, retro_ptro_81,
Pteropus vampyrus	ENSPVAG00000011401	1 retrocopy	retro_pvam_389,
Tupaia belangeri	ENSTBEG00000001276	1 retrocopy	retro_tbel_3335,
Tarsius syrichta	ENSTSYG00000003719	1 retrocopy	retro_tsyr_2086,
Vicugna pacos	ENSVPAG00000007888	2 retrocopies	retro_vpac_241, retro_vpac_27,