RetrogeneDB ID: retro_mluc_1569

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429863:3014235..3015044(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000012515
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000002464
• Aliases: None
• Description: Annexin [Source:UniProtKB/TrEMBL;Acc:G1NXX1]

Sequence

>retro_mluc_1569
ATGTCTCCTGTTCTCGAAATTCTGTGCAAGCTCGGCTTGGAGGGCGATCGCTCCACACCCGTACGTGCGTATGAGTCAGT
CATAGCCTACCCCAACTTCGATGCCCACCGGGACGCTTTGCACATTGAAAGGGCCATCAATACCAAAGGGGTAGATGAGG
TCACCATGTCAACGTTTTGACCAAGCGCAGCAATGAACAGAGGCGGGATATTGCCTTCGACTACCAGGGAAGACCGAAAA
GGAACTTGCATCAGCACCAAGCCAGCCCTGTCCGGCCCCCTGGAGACCGTGACTCTGTGCCTCTTGGAAATGCCTGCTCA
TACGATGCTCCCAAGCTGAAGGCCTCCATGACAGGGCTGGGCACTGAGGACTCTCTTACTGAGATCATCTGCTCCAGGAC
CACCAGGAGCTGCGGGAAACTAACAGAGTCCACAAGGAAATGCACAAGACTAATCTGGAGAAGGACACTATTTCCGACAC
ATCTGGCGACTTCCACAAGCTGATGTTGCCCTCGCAGAGGGTAGAAGAGCAGGGGGCGGCTCTGTCATCGATTATGAGCT
GATTGACCAAGATGCCCGGGATCTCTGTGATGCTGGAGTGAAGAGACAGGAACTGATGTTCCCAAGTGGGTCAGCATCAT
GACCGTGTCCCACCTCCAGAAAGTATTTGACAAGCACAAGAGCTACAGCCCTTGTGACATGTTGCAGAGCATCAAGAAGG
AAGTCAAGGGAGACCTGGAAAATGCTTTCCTGAACCTGGTCCACTATATCCAGAACAAGCCCCTATATTTTGCTGAGCGA
CTGTACGAC

Alignment

ORF - retro_mluc_1569 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.03 %
• Parental protein coverage: 81.42 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 7

Retrocopy - Parental Gene Alignment:

Parental  MSTVHEILCKLSLEGEHSTPVSAYGSVKAYPNFDADRDALNIETAIKTKGVDEVTI-VNILTNRSNEQRQ
          MS.V.EILCKL.LEG..STPV.AY.SV.AYPNFDA.RDAL.IE.AI.TKGVDEVT..VN.LT.RSNEQR.
Retrocopy MSPVLEILCKLGLEGDRSTPVRAYESVIAYPNFDAHRDALHIERAINTKGVDEVTM<VNVLTKRSNEQRR

Parental  DIAFAYQRR-TKKELASA-LKSALSGHLETVILGLLKTPAQ-YDASELKASMKGLGTDEDSLIEIICSRT
          DIAF.YQ.R.T.KELASA..K.ALSG.LETV.L.LL..PA..YDA..LKASM.GLGT.EDSL.EIICSRT
Retrocopy DIAFDYQGR<TEKELASA<TKPALSGPLETVTLCLLEMPAH<YDAPKLKASMTGLGT-EDSLTEIICSRT

Parental  -NQELQEINRVYKEMYKTDLEKDIISDTSGDFRKLM-VALAKGRRAEDGSVIDYELIDQDARDLYDAGVK
          ..QEL.E.NRV.KEM.KT.LEKD.ISDTSGDF.KLM.VALA.GRRA..GSVIDYELIDQDARDL.DAGVK
Retrocopy <HQELRETNRVHKEMHKTNLEKDTISDTSGDFHKLM<VALAEGRRAGGGSVIDYELIDQDARDLCDAGVK

Parental  RK-GTDVPKWISIMTERSVFHLQKVFDRYKSYSPYDMLESIKKEVKGDLENAFLNLVQCVQNKPLYFADR
          R..GTDVPKW.SIMT...V.HLQKVFD..KSYSP.DML.SIKKEVKGDLENAFLNLV...QNKPLYFA.R
Retrocopy RQ<GTDVPKWVSIMT---VSHLQKVFDKHKSYSPCDMLQSIKKEVKGDLENAFLNLVHYIQNKPLYFAER

Parental  LYD
          LYD
Retrocopy LYD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1569 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 17 parental genes, and 35 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000016686	3 retrocopies	retro_cfam_1631, retro_cfam_367, retro_cfam_707,
Choloepus hoffmanni	ENSCHOG00000012143	3 retrocopies	retro_chof_1028, retro_chof_1965, retro_chof_815,
Felis catus	ENSFCAG00000007862	2 retrocopies	retro_fcat_594, retro_fcat_709,
Homo sapiens	ENSG00000182718	3 retrocopies	retro_hsap_3114, retro_hsap_4150, retro_hsap_580,
Gorilla gorilla	ENSGGOG00000009738	3 retrocopies	retro_ggor_2137, retro_ggor_2788, retro_ggor_515,
Macropus eugenii	ENSMEUG00000008980	3 retrocopies	retro_meug_1000, retro_meug_312, retro_meug_389,
Myotis lucifugus	ENSMLUG00000002464	3 retrocopies	retro_mluc_1569 , retro_mluc_2223, retro_mluc_2431,
Monodelphis domestica	ENSMODG00000011604	1 retrocopy	retro_mdom_1471,
Mustela putorius furo	ENSMPUG00000000762	2 retrocopies	retro_mputfur_73, retro_mputfur_79,
Nomascus leucogenys	ENSNLEG00000011678	2 retrocopies	retro_nleu_769, retro_nleu_802,
Otolemur garnettii	ENSOGAG00000009952	1 retrocopy	retro_ogar_3510,
Pongo abelii	ENSPPYG00000006526	2 retrocopies	retro_pabe_2572, retro_pabe_607,
Pan troglodytes	ENSPTRG00000007132	2 retrocopies	retro_ptro_2106, retro_ptro_81,
Pteropus vampyrus	ENSPVAG00000011401	1 retrocopy	retro_pvam_389,
Tupaia belangeri	ENSTBEG00000001276	1 retrocopy	retro_tbel_3335,
Tarsius syrichta	ENSTSYG00000003719	1 retrocopy	retro_tsyr_2086,
Vicugna pacos	ENSVPAG00000007888	2 retrocopies	retro_vpac_241, retro_vpac_27,