RetrogeneDB ID: retro_mluc_2068

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430012:788130..788350(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CHURC1
• Ensembl ID: ENSMLUG00000004300
• Aliases: None
• Description: None

Sequence

>retro_mluc_2068
TTTATGCTGATCACAAACAAATCTTTGAAAGAGGAAGATGGAGAAGAAATAGTTACCTATGATCATCTGTTAGAATTGTC
ATCACGTAGTAGCCAGGCATGAAGAGACATTCCATATCATGGATGAATTTCAGGAGCACACCGCGCTGTGTTTGTTATGT
GGCAAAGCTGAAGATATTAACAGTATTCTCCCTGATGACCCCCGACAAATGACTCTGATA

Alignment

ORF - retro_mluc_2068 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.33 %
• Parental protein coverage: 66.07 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  FMLITNKSLKEEDGEEIVTYDHLCQNC-HHVVARHEYTFSIMDEFQEYTMLCLLCGKAEDTISILPDDPR
          FMLITNKSLKEEDGEEIVTYDHL.....H.V....E.TF.IMDEFQE.T.LCLLCGKAED..SILPDDPR
Retrocopy FMLITNKSLKEEDGEEIVTYDHLLELS>HVVARHEE-TFHIMDEFQEHTALCLLCGKAEDINSILPDDPR

Parental  QMTLL
          QMTL.
Retrocopy QMTLI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2068 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000004300	1 retrocopy	retro_mluc_2068 ,
Monodelphis domestica	ENSMODG00000009664	1 retrocopy	retro_mdom_1775,
Mustela putorius furo	ENSMPUG00000006792	1 retrocopy	retro_mputfur_554,
Oryctolagus cuniculus	ENSOCUG00000001838	1 retrocopy	retro_ocun_997,
Pteropus vampyrus	ENSPVAG00000011384	1 retrocopy	retro_pvam_406,