RetrogeneDB ID: retro_mluc_177

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430129:836727..838419(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000028527
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000015803
• Aliases: None
• Description: None

Sequence

>retro_mluc_177
ATGGATGTGAGCGAACTTCTCAGCGACCAGCCCAACAGGGGCACAAAACGTCCCCGGGATGATGGACAGGAAGAGCTGAG
AAGGCCCAGGAAACAAGCTGGTCCTCGAGAACCTGGCCGCTTTCGGGAAGAGGAAATGGCGGTGGCAGAAGAAGCAGATG
ATCACCAAAAACGGTTGCTTCAGATTATGGACAGACAAGGTGAGGAGAACGGGGAAGAGGAGGCCCCACTGGATGCAAGC
TCAGTGAAGAAAATGATCCTCACATTTGAAAAAAGATCCTACAAAAACCAGGAGTTGCGGATCAAGTTTCCAAACAACCC
AGAGAAGTTTATGGAATACGAGCTGGACCTCAATGACATCATTCAGGAGATGCACGTGGTGGCCACCACGCCGGACCTGT
ACCACCTCCTCGTGGAGCTGAATGCTGTTCAGTCTCTCCTCGGGTTGCTGAGACATGATAATACAGATGTGTCCATAGCT
GTGGTGGATCTGCTTCAGGAATTAACAGATGTGGACACCCTCCATGAGAGTGAAGAGGGAGCAGAGGTGCTCACCGATGC
TCTGGTGGCCGGACAAGTGGTGGCACTGCTGGTGCAGAACCTGGAGCGCCTGGATGAGTCTGGGAGAGAGGAGGCGCAGG
GCGTGCACAACACTCTGGCTATTGTGGAAAACATGGCTGAGTTCCGGCCCCAGCTGTGCACGGAGGCCGCCCGGCAGGGT
CTTCTGCAGTGGCTGTTGAAGAGGCTGAAGGCCAAGATGCCTTTCGATGCCAACAAGCTGTACTGTAGTGAAGTGCTGGC
CATATTGCTGCAGGACAGCGATGCCAACAGGGAATTGCTTGGGGAGCTGGATGGAATTGATGTGCTTCTGCAGCAGTTAT
CCGTGTTCAAAAGACACGATCCTCACACTGCAGAGGAGCAGGAGATGATGGAGAATCTGTTTGACACACTCTGTTCCTGC
CTGATGCTCAGTTCCAATCGTGAGCGCTTCCTCGAGGGCGAGGGTCTTCAGCTGATGAATCTCATGCTCAGAGCAAAGAA
GACTTCGAGGAGCAGCGCCCTGAAGGTGCTGGACCATGCCATGATTGGGCCCGAGGGCACACACTGTTGCCGTAAGTTTG
TTGACATTCTTGGCTTGCGAACCATCTTTCCTCTCTTTATGAAATCTCCCAAGAAGATCAAGAAAGTGGGAACCACCGAG
AAGGAACAGGAAGAGCACGTGTGTGCCATCCTGGCTTCCCTCTTGAGGAACCTGGAAGGGCAAAGGCGAACCCGGCTGCT
GGATAAATTCACTGAAAATGACCTGGAGAAGGTGGACAGGCTGATGGAGCTGCATTTTAAATATCTGGATGCCATGCAGG
TGGCCGACAGGAAGATTGAAGGGGAAAGGCATGACAGGGTCCGGCGTGGGGAAATCCTAGACCAGGTCTCTGAAGATGAG
TTCTACCTGCAGCGCTTGGACGCAGGGCTCTTTGTCCTCCAGCACATCTGCTACATCATGGCGGAGGTCTGCAATGGCGG
CATCCCCCAGATCCGGCAGAGGGTTCAGCAGATCTTAAACATGAGAGGAGGCTCCATCCAAATGGTCAGGCACATCGTCA
AGGAGTACGCAGAGAACATCGGGGAGGGCCCGGGTCAGGACTTCCAGGAGAGCGAGCAGAAGCGCATCCTGGGCCTGCTG
GACAACTTCTAG

Alignment

ORF - retro_mluc_177 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.5 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  QMRSHQPNRGTKRPRDDEEEELKMRRKQAGTRERGRFREEEMTVVEEADDDKKRLLQIIDREGEEEEEEE
          ...S.QPNRGTKRPRDD..EEL...RKQAG.RE.GRFREEEM.V.EEADD..KRLLQI.DR.GEE..EEE
Retrocopy ELLSDQPNRGTKRPRDDGQEELRRPRKQAGPREPGRFREEEMAVAEEADDHQKRLLQIMDRQGEENGEEE

Parental  EPLDESSVKKMILTFEKRSYKNQELRIKFPDNPEKFMESELDLNDIIQEMHVVATMPDLYHLLVELNAVQ
          .PLD.SSVKKMILTFEKRSYKNQELRIKFP.NPEKFME.ELDLNDIIQEMHVVAT.PDLYHLLVELNAVQ
Retrocopy APLDASSVKKMILTFEKRSYKNQELRIKFPNNPEKFMEYELDLNDIIQEMHVVATTPDLYHLLVELNAVQ

Parental  SLLGLLGHDNTDVSIAVVDLLQELTDIDTLHESEEGAEVLIDALLKVDGQVVALLVQNLERLDESVKEEA
          SLLGLL.HDNTDVSIAVVDLLQELTD.DTLHESEEGAEVL.DAL..V.GQVVALLVQNLERLDES..EEA
Retrocopy SLLGLLRHDNTDVSIAVVDLLQELTDVDTLHESEEGAEVLTDAL--VAGQVVALLVQNLERLDESGREEA

Parental  DGVHNTLAIVENMAEFRPEMCTEAAQQGLLQWLLKRLKAKMPFDANKLYCSEVLAILLQDNDENRELLGE
          .GVHNTLAIVENMAEFRP..CTEAA.QGLLQWLLKRLKAKMPFDANKLYCSEVLAILLQD.D.NRELLGE
Retrocopy QGVHNTLAIVENMAEFRPQLCTEAARQGLLQWLLKRLKAKMPFDANKLYCSEVLAILLQDSDANRELLGE

Parental  LDGIDVLLQQLSVFKRHNPSTAEEQEMMENLFDSLCSCLMLSSNRERFLKGEGLQLMNLMLREKKISRSS
          LDGIDVLLQQLSVFKRH.P.TAEEQEMMENLFD.LCSCLMLSSNRERFL.GEGLQLMNLMLR.KK.SRSS
Retrocopy LDGIDVLLQQLSVFKRHDPHTAEEQEMMENLFDTLCSCLMLSSNRERFLEGEGLQLMNLMLRAKKTSRSS

Parental  ALKVLDHAMIGPEGTDNCHKFVDILGLRTIFPLFMKSPKKIKKVGTTEKEHEEHVCSILASLLRNLRGQQ
          ALKVLDHAMIGPEGT..C.KFVDILGLRTIFPLFMKSPKKIKKVGTTEKE.EEHVC.ILASLLRNL.GQ.
Retrocopy ALKVLDHAMIGPEGTHCCRKFVDILGLRTIFPLFMKSPKKIKKVGTTEKEQEEHVCAILASLLRNLEGQR

Parental  RTRLLNKFTENDSEKVDRLMELHFKYLDAMQVADKKIEGEKHEIVGTTGIIMNTNSWENYSQQVYSIKCS
          RTRLL.KFTEND.EKVDRLMELHFKYLDAMQVAD.KIEGE.H..V....I.......E.Y.Q........
Retrocopy RTRLLDKFTENDLEKVDRLMELHFKYLDAMQVADRKIEGERHDRVRRGEILDQVSEDEFYLQRLDAGLFV

Parental  YHILCTIMTYKLHANFATALIRIRQVLGLRGNERSMVRAYVQKYAENIGDGRSPEFRESEQKRILGLLDN
          ....C.IM.............R..Q.L..RG....MVR..V..YAENIG.G....F.ESEQKRILGLLDN
Retrocopy LQHICYIMAEVCNGGIPQIRQRVQQILNMRGGSIQMVRHIVKEYAENIGEGPGQDFQESEQKRILGLLDN

Parental  F
          F
Retrocopy F

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_177 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000132792	1 retrocopy	retro_hsap_4819,
Gorilla gorilla	ENSGGOG00000000614	1 retrocopy	retro_ggor_3003,
Macropus eugenii	ENSMEUG00000013001	1 retrocopy	retro_meug_910,
Myotis lucifugus	ENSMLUG00000015803	1 retrocopy	retro_mluc_177 ,
Macaca mulatta	ENSMMUG00000017224	1 retrocopy	retro_mmul_2571,
Nomascus leucogenys	ENSNLEG00000006291	1 retrocopy	retro_nleu_2194,
Otolemur garnettii	ENSOGAG00000011494	1 retrocopy	retro_ogar_1311,
Pongo abelii	ENSPPYG00000010989	1 retrocopy	retro_pabe_3747,
Pan troglodytes	ENSPTRG00000023688	1 retrocopy	retro_ptro_3208,