RetrogeneDB ID: retro_meug_910

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold2285:45758..46786(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CTNNBL1
• Ensembl ID: ENSMEUG00000013001
• Aliases: None
• Description: catenin, beta like 1 [Source:HGNC Symbol;Acc:15879]

Sequence

>retro_meug_910
ATTGTAGAAAATATGACTGAGTTTCAACCAGAAATGTGCACAGAAACTGCCCAACAGGGCCTCATGCAGTGGTTGTTGAA
GGGACTGAAGGCAAAAATGCCTTTTGATGCCAACAAGCTCTACTGCCATGAGGTGCTAGCCATTCTGCTCCAGGATAATG
ATGACAACAGGGAATTGCTTGGGGAACTGGATGGAATTGATGTGCTTCTTCAGAAGTTATGTGTAGTAAATGGCACAATC
TTGGTACAGCTGAAGAGCAGGAAATGATGGAGAACTTGTTCGATTCACTCTGTTCCTGTTTAATGCTTAGTTCCAATCAT
GAGCGTTACTTGAAGAGAGAAGGTCTCCAGCTGATGAATCTCATGCTCAGGGCAAAGAAGATCTCTCAAAGTAGTGCCCT
GAAGGTATTGGATCATGCTACGATTGGACCTGAGGGTACTGACAACTGCCATAAGTTTGTTGACATGTTAGGTTTGCGAA
CCATCTTCCCTCTCTTCATGAAATCTCCCAAGAAAATCAAGAAAGTGGGAACCATAGAAAAGGAACATGAAGAGCATGTC
TGTTCAATCCTGGCCTCCCTCCTGAGGAATCTGAGAGGGCAGCAACGAACTCGACAGCTGAACAAATTCACCGAAAATGG
CAGCGAAAAGGTTGACAGACAAATGGAGTTGCATTTTAAATATCTGGATGCAATACAGGTGGCTGACAAGAAAATTGAAG
GAGAAAAGTATGACATGGTGTGAAGAGGAGAGATCATCGATGATGACATAGAAGATGAATTCTATCTCTGCCGCTTAGAT
GCTGGGCTCTTTGTCCTGCAGCACATCCGTTACATCATGACAGAGATCTGTAATGCCAGTGTCCTCCAGATTTGCCAGAG
GGTACATCAGATTCTGAACATGTGTGAAAGCTCCATCAAGATTATCTGACACATCATCAAGGAATATGCAGAAAACATTG
GTGATGGGAAGAACCAGGAATTCCAGGAGAATGAACAGAAGCATATTCTGGAACTGCTGCAGAATTTT

Alignment

ORF - retro_meug_910 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.53 %
• Parental protein coverage: 62.03 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  IVENMAEFRPEMCTEAAQQGLMQWLLKRLKAKMPFDANKLYCSEVLAILLQDNDDNRELLGELDGIDVLL
          IVENM.EF.PEMCTE.AQQGLMQWLLK.LKAKMPFDANKLYC.EVLAILLQDNDDNRELLGELDGIDVLL
Retrocopy IVENMTEFQPEMCTETAQQGLMQWLLKGLKAKMPFDANKLYCHEVLAILLQDNDDNRELLGELDGIDVLL

Parental  QQLSVF-KRHNPGTAEEQEMMENLFDSLCSCLMLSSNRERFLKGEGLQLMNLMLREKKISRSSALKVLDH
          Q.L.V..K.HN.GTAEEQEMMENLFDSLCSCLMLSSN.ER.LK.EGLQLMNLMLR.KKIS.SSALKVLDH
Retrocopy QKLCVV<KWHNLGTAEEQEMMENLFDSLCSCLMLSSNHERYLKREGLQLMNLMLRAKKISQSSALKVLDH

Parental  AMIGPEGTDNCHKFVDILGLRTIFPLFMKSPKKIKKVGTTEKEHEEHVCSILASLLRNLRGQQRTRLLNK
          A.IGPEGTDNCHKFVD.LGLRTIFPLFMKSPKKIKKVGT.EKEHEEHVCSILASLLRNLRGQQRTR.LNK
Retrocopy ATIGPEGTDNCHKFVDMLGLRTIFPLFMKSPKKIKKVGTIEKEHEEHVCSILASLLRNLRGQQRTRQLNK

Parental  FTENDSEKVDRLMELHFKYLDAMQVADKKIEGEKHDMVRRGEIIDDDIEDEFYLRRLDAGLFVLQHICYI
          FTEN.SEKVDR.MELHFKYLDA.QVADKKIEGEK.DMV.RGEIIDDDIEDEFYL.RLDAGLFVLQHI.YI
Retrocopy FTENGSEKVDRQMELHFKYLDAIQVADKKIEGEKYDMV*RGEIIDDDIEDEFYLCRLDAGLFVLQHIRYI

Parental  MAEICNASVPQIRQRVHQILNMRGSSIKIVRHIIKEYAENIGDGKNQEFQENEQKRILELLENF
          M.EICNASV.QI.QRVHQILNM..SSIKI..HIIKEYAENIGDGKNQEFQENEQK.ILELL.NF
Retrocopy MTEICNASVLQICQRVHQILNMCESSIKII*HIIKEYAENIGDGKNQEFQENEQKHILELLQNF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_910 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_910 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000132792	1 retrocopy	retro_hsap_4819,
Gorilla gorilla	ENSGGOG00000000614	1 retrocopy	retro_ggor_3003,
Macropus eugenii	ENSMEUG00000013001	1 retrocopy	retro_meug_910 ,
Myotis lucifugus	ENSMLUG00000015803	1 retrocopy	retro_mluc_177,
Macaca mulatta	ENSMMUG00000017224	1 retrocopy	retro_mmul_2571,
Nomascus leucogenys	ENSNLEG00000006291	1 retrocopy	retro_nleu_2194,
Otolemur garnettii	ENSOGAG00000011494	1 retrocopy	retro_ogar_1311,
Pongo abelii	ENSPPYG00000010989	1 retrocopy	retro_pabe_3747,
Pan troglodytes	ENSPTRG00000023688	1 retrocopy	retro_ptro_3208,