RetrogeneDB ID: retro_mluc_1483

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429845:5003516..5004129(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000000184
• Aliases: None
• Description: None

Sequence

>retro_mluc_1483
GGAAAAGGTCATCTCAAACAAAAATGACCTGTCAAAGACAGACTAGGAGACAGATTAGAAATGAACCACAGAGGCCGGTA
TGAGATCACAGAGGATGATTCTCAGGAATATGTGGCTAATGAAATTACCTACAAGTTGTAGGAACCAAAGAAAGATCTGG
TAGCCCGAGTAGTGAGTACTAATATACTTGGGGGGAAAAAAGGCAATTGAACTTCTGATGCAAACTACTGATGTTGAATA
AAATGGTGGCCTTTTTATAAATGGGTGGTAGTGGGAGAAGAACAGCAGGTGGAGTTTTCTTGGATCTCCAGAAAAACACT
CTTAGTATCAGTGAGGAACAATTTAAGGACATTTTCTACATTGAAAAGCAAACGGAATATGAAAATAAAAAAGCTGTTAG
GAAGAAGAGAACACAAGTGTTGGGGGAAAAGATGAAACAGGCTGTTAAAAGTCTAAATTTTCAAGAGGATGATGATATAT
CACAAGACATGTTTGCAAGCGACACAAACGAGGCCCTGGCCTCTCTTGATGAATCACAGGAAGGACATGGAGAAACCAAG
TTGTTGCAGAGGAAGTCATTGAGGTTGATCATTTTCATGAATTGCATGTGTTT

Alignment

ORF - retro_mluc_1483 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.81 %
• Parental protein coverage: 55.8 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  GQGHLKRKRPVKDRLGDRLEMNYKGRYEITEEDSQERVADEITFRLQEPKKDLIARVVS--IIG-NKKAI
          G.GHLK.K.PVKDRLGDRLEMN..GRYEITE.DSQE.VA.EIT..L.EPKKDL.ARVVS..I.G..KKAI
Retrocopy GKGHLKQK*PVKDRLGDRLEMNHRGRYEITEDDSQEYVANEITYKL*EPKKDLVARVVSTNILG>GKKAI

Parental  ELLMETAEVEQNGGLFI-MNGSRRRTPGGVFLNLLKNTPSISEEQIKDIFYIENQKEYENKKAARKRRTQ
          ELLM.T..VE.NGGLFI.M.GS.RRT.GGVFL.L.KNT.SISEEQ.KDIFYIE.Q.EYENKKA.RK.RTQ
Retrocopy ELLMQTTDVE*NGGLFI>MGGSGRRTAGGVFLDLQKNTLSISEEQFKDIFYIEKQTEYENKKAVRKKRTQ

Parental  LLGKKMKQAIKSLNFQEDDDTSRETFASDTNEALASLDESQEGHGETKL-DVEEDIEVDHSHDLDIF
          .LG.KMKQA.KSLNFQEDDD.S...FASDTNEALASLDESQEGHGETKL...EE.IEVDH.H.L..F
Retrocopy VLGEKMKQAVKSLNFQEDDDISQDMFASDTNEALASLDESQEGHGETKL<VAEEVIEVDHFHELHVF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1483 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000010042	1 retrocopy	retro_amel_423,
Canis familiaris	ENSCAFG00000000590	2 retrocopies	retro_cfam_1136, retro_cfam_1701,
Myotis lucifugus	ENSMLUG00000000184	1 retrocopy	retro_mluc_1483 ,