RetrogeneDB ID: retro_mluc_1426

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429836:3469557..3470007(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000008267
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ASF1B
• Ensembl ID: ENSMLUG00000000537
• Aliases: None
• Description: None

Sequence

>retro_mluc_1426
GAGGAGTTTGATCAAATCCTAGACTCCATGCTGGTTGTCCTATCCCAGCCGGGAGACGCGTTCCTCTTCCAGGCCGATGC
TCCCAACCCATCCCTCATCCCTGAGACTGACGCCATTGGTGTGACTGTGGTCCTTGTCACCTGCACCTCCCGTGGCCAAG
AGTTCACCTGTGTGGGCCACTATGTCAATGAGTACTCTGACCCAGAGTTGGGGGAGAACCCACCCCCAAAGCCAGACTTC
TCTCAGCTCCCAAGGAACGTCTTGGCCGTGAATCCCTGGATGACCCGTTTCCATATCAACTGGGACAACAACACAGACAG
GCTACAGGCCGTAGAGAACCAGGACCCCACCCTAAGCAGCAGCCTCCCCATCAACTGTATCCTTGTCAAGGGCTTGGGGC
TCCCTGGCTGCATCCATGGCCTCCTCCCGGAGAGCTCCATGGGCTGCATC

Alignment

ORF - retro_mluc_1426 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.97 %
• Parental protein coverage: 75.25 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  EEFDQILDSVLVGPIPAGRHMFVFQADAPNPSLIPESDAIGVTVVLITCTYHGQEFIRVGYYVNNEYPDP
          EEFDQILDS.LV.....G...F.FQADAPNPSLIPE.DAIGVTVVL.TCT..GQEF..VG.YVN.EY.DP
Retrocopy EEFDQILDSMLVVLSQPG-DAFLFQADAPNPSLIPETDAIGVTVVLVTCTSRGQEFTCVGHYVN-EYSDP

Parental  ELRENPPPKPDFSQLQRNILASNPRVTRFHINWDSNTDRLEAIENQDPALSCSLPINCTPVKGLGLPGCI
          EL.ENPPPKPDFSQL.RN.LA.NP..TRFHINWD.NTDRL.A.ENQDP.LS.SLPINC..VKGLGLPGCI
Retrocopy ELGENPPPKPDFSQLPRNVLAVNPWMTRFHINWDNNTDRLQAVENQDPTLSSSLPINCILVKGLGLPGCI

Parental  PGLLPENSMDCI
          .GLLPE.SM.CI
Retrocopy HGLLPESSMGCI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1426 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000004085	1 retrocopy	retro_btau_662,
Canis familiaris	ENSCAFG00000016482	1 retrocopy	retro_cfam_33,
Echinops telfairi	ENSETEG00000013713	1 retrocopy	retro_etel_379,
Myotis lucifugus	ENSMLUG00000000537	4 retrocopies	retro_mluc_1426 , retro_mluc_2042, retro_mluc_2614, retro_mluc_775,
Myotis lucifugus	ENSMLUG00000013053	1 retrocopy	retro_mluc_1410,
Monodelphis domestica	ENSMODG00000012099	4 retrocopies	retro_mdom_366, retro_mdom_367, retro_mdom_369, retro_mdom_688,
Sorex araneus	ENSSARG00000000534	1 retrocopy	retro_sara_552,