RetrogeneDB ID: retro_mluc_1410

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429833:5297822..5298284(+)
• Located in intron of: ENSMLUG00000011926

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000013053
• Aliases: None
• Description: None

Sequence

>retro_mluc_1410
ATCACCTTCAAGTGCATCAAGGACCTGCCTGAAGACTTGAAATGAAAAATTATCTATATGGGTTCTGCAGAAAGTGAAAA
ATACGATCAAGTTGTAGACTCTGTCTTAGTGGGCCCTGTTCATAGGAGAAGGCATATGTTTGTATTTCAGGCTGATGCAC
CTAATCCAAGACTAATTCCAGATGCAGAAGCAATAGGTCTAACAGTTGTGCTAATTACATGCACCGATTGAGGTCAGAAT
TTATTAGATTTGGCTATTATATAAGTAATGAATATTATCGAGACAGAATTAAGGGAAAATCCACCAGTAAAACTAGACTT
TTCTAAGCTTCAAAGGAACATTTTGGCATCGAATCCCAGAGTCACACGATTCCACATTAATTCAGAAGATAACACAGAAA
AACTGGAAGATGCAGAAAACAGTAATACAAATCTACAATCACTTCTTTCAACGGATGCATTA

Alignment

ORF - retro_mluc_1410 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.05 %
• Parental protein coverage: 75.49 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  ITFECIEDLSEDLEWKIIYVGSAESEEYDQVLDSVLVGPVPAGRHMFVFQADAPNPGLIPDADAVGVTVV
          ITF.CI.DL.EDL..KIIY.GSAESE.YDQV.DSVLVGPV...RHMFVFQADAPNP.LIPDA.A.G.TVV
Retrocopy ITFKCIKDLPEDLK*KIIYMGSAESEKYDQVVDSVLVGPVHRRRHMFVFQADAPNPRLIPDAEAIGLTVV

Parental  LITCTYRGQ-EFIRVGYYVNNEY-TEIELRENPPVKPDFSKLQRNILASNPRVTRFHINWEDNTEKLEDA
          LITCT..GQ.EFIR.GYY..NEY..E.ELRENPPVK.DFSKLQRNILASNPRVTRFHIN.EDNTEKLEDA
Retrocopy LITCTD*GQ<EFIRFGYYISNEY>IETELRENPPVKLDFSKLQRNILASNPRVTRFHINSEDNTEKLEDA

Parental  ESSNPNLQSLLSTDAL
          E.SN.NLQSLLSTDAL
Retrocopy ENSNTNLQSLLSTDAL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1410 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000013007	1 retrocopy	retro_chof_496,
Felis catus	ENSFCAG00000023561	1 retrocopy	retro_fcat_1357,
Myotis lucifugus	ENSMLUG00000000537	4 retrocopies	retro_mluc_1426, retro_mluc_2042, retro_mluc_2614, retro_mluc_775,
Myotis lucifugus	ENSMLUG00000013053	1 retrocopy	retro_mluc_1410 ,
Otolemur garnettii	ENSOGAG00000034346	1 retrocopy	retro_ogar_2054,
Ochotona princeps	ENSOPRG00000004979	1 retrocopy	retro_opri_416,
Tupaia belangeri	ENSTBEG00000000592	2 retrocopies	retro_tbel_2900, retro_tbel_4175,