RetrogeneDB ID: retro_mluc_1401

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429832:1663796..1664636(+)
• Located in intron of: ENSMLUG00000016911

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000011804
• Aliases: None
• Description: None

Sequence

>retro_mluc_1401
GCCCGAAATGCAGAAAAGGCCATGACGGCCTTAGCAAGACTTCGCCAAGCTCAATTGGAAGAGGGAAAAGTGAAGGAATG
AAGACCCTTCCTTACCTCAGAATGTACTGACTTGCCCAAAGCTGAGAAGTGGAGACGACAGATCATTGGAGAGATCTCTA
AAAAAGTGGCTCAAATTCAGAATGCTGGTTTAGGTGAATTCCGAATTCGTGACCTGAATGATGAAATTAACAAATTGCTA
AGAGAGAAAGGACACTGGGAGGTCCGGATAAAGGAGCTGGGTGGTCCTGATTATGTAAAAGTTGGCCCTAAAATGCTAGA
TCATGAAGGCAAAGAAGTCCCGGGAAATCGAGGTTACAAATACTTTGGAGCGGCAAAAGATTTGCCTGGTGTTAGAGAGC
TATTTGAAAAAGAACCTCTTCCTCCTCCAAGAAAGACACGTGCTGAGCTCATGAAGGCAATTGATTTTGAATACTATGGT
TACCTAGATGAAGATGATGGTGTTATTGTGCCTTTGGAACAGGAATATGAAAAGAAATTCAGAGCCCAGTTAGTGGAAAA
GTGGAAAGCAGAGAGAGAGGCTCGGCTGGCAAGAGGAGAAAAGGAAGAGGAGGAAGAAATCAACATCTATGCTGTCACGG
AGGAGGAGTCTGATGAGGAAGGCAGCCAGGAGAAAGGAGGCGAAGATGAGCAGCAGAAGTTCATCACCCATGTCCCTGTG
CCATCGCAGCAAGAGATCAAGGAGGCAAGAGATCGAAGGAAGAAGATGGAACTCCTCCAGAAATATGCAAGTGAGACCCT
GCAGGCCCAGAGCGAAGAGGCCAAAAGACTCATGGGATAT

Alignment

ORF - retro_mluc_1401 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.32 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ARNAEKAMTALARFRQAQLEEGKVKERRPFLASECTELPKAEKWRRQVNSEYDLSRSNILKTGLGEFRIR
          ARNAEKAMTALAR.RQAQLEEGKVKE.RPFL.SECT.LPKAEKWRRQ...E.......I...GLGEFRIR
Retrocopy ARNAEKAMTALARLRQAQLEEGKVKE*RPFLTSECTDLPKAEKWRRQIIGEISKKVAQIQNAGLGEFRIR

Parental  DLNDEINKLLREKGHWEVRIKELGGPDYVKVGPKMLDHEGKEVPGNRGYKYFGAAKDLPGVRELFEKEPL
          DLNDEINKLLREKGHWEVRIKELGGPDYVKVGPKMLDHEGKEVPGNRGYKYFGAAKDLPGVRELFEKEPL
Retrocopy DLNDEINKLLREKGHWEVRIKELGGPDYVKVGPKMLDHEGKEVPGNRGYKYFGAAKDLPGVRELFEKEPL

Parental  PPPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEYEKKFRAQLVEKWKAEREARLARGEKEEEEEEEEE
          PPPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEYEKKFRAQLVEKWKAEREARLARGEKEEEEE....
Retrocopy PPPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEYEKKFRAQLVEKWKAEREARLARGEKEEEEE----

Parental  INIYAVTEEESDEEGSQEKGGEDEQQKFIAHVPVPSQQEIEEALVRRKKMELLQKYASETLQAQSEEAKR
          INIYAVTEEESDEEGSQEKGGEDEQQKFI.HVPVPS..............ELLQKYASETLQAQSEEAKR
Retrocopy INIYAVTEEESDEEGSQEKGGEDEQQKFITHVPVPSXXXXXXXXXXXXXXELLQKYASETLQAQSEEAKR

Parental  LMGY
          LMGY
Retrocopy LMGY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1401 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Dipodomys ordii	ENSDORG00000006886	1 retrocopy	retro_dord_331,
Ficedula albicollis	ENSFALG00000000023	1 retrocopy	retro_falb_5,
Loxodonta africana	ENSLAFG00000004015	2 retrocopies	retro_lafr_1070, retro_lafr_1170,
Myotis lucifugus	ENSMLUG00000011804	1 retrocopy	retro_mluc_1401 ,
Oryctolagus cuniculus	ENSOCUG00000003923	1 retrocopy	retro_ocun_1485,
Taeniopygia guttata	ENSTGUG00000003998	1 retrocopy	retro_tgut_5,