RetrogeneDB ID: retro_mluc_1204

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429806:1766831..1767085(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: C2ORF76
• Ensembl ID: ENSMLUG00000004031
• Aliases: None
• Description: None

Sequence

>retro_mluc_1204
TTTCTAAAGCAAGATGTCTCTTTAAAAACCAACCTGCCACCACCATTCAGATACTGTAAATATGACAAACTAAAGATCAT
TCATCAAGCACATAAATCAAAGACAATTGAACTTGTGTTGAGTTTGGAAGATGTGGCCAGACTCCTGTTAAAAGAAGACA
GCGTCCTAAAAGCGGCCAAATCCCCAATAATAATGAAACTTCATTCTTCTGTGAAGAAGATTATAAGAACTACAAAGCTA
ATCCCATTTCATCC

Alignment

ORF - retro_mluc_1204 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.58 %
• Parental protein coverage: 67.46 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  FLKQDIPLRTSLPPPFRNYKYDKLKIIHQAHKSKTNELVLSLEDDDTLMLKEDHTLKAA-GIANETEIAF
          FLKQD..L.T.LPPPFR..KYDKLKIIHQAHKSKT.ELVLSLED...L.LKED..LKAA..I.N..E..F
Retrocopy FLKQDVSLKTNLPPPFRYCKYDKLKIIHQAHKSKTIELVLSLEDVARLLLKEDSVLKAA<QIPNNNETSF

Parental  FCEEDYRNYKANPISS
          FCEEDY.NYKANPISS
Retrocopy FCEEDYKNYKANPISS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1204 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000008507	2 retrocopies	retro_amel_1062, retro_amel_1693,
Bos taurus	ENSBTAG00000010599	1 retrocopy	retro_btau_965,
Canis familiaris	ENSCAFG00000004896	2 retrocopies	retro_cfam_1119, retro_cfam_1727,
Equus caballus	ENSECAG00000002063	1 retrocopy	retro_ecab_384,
Myotis lucifugus	ENSMLUG00000004031	1 retrocopy	retro_mluc_1204 ,
Mustela putorius furo	ENSMPUG00000000943	1 retrocopy	retro_mputfur_726,
Mus musculus	ENSMUSG00000026388	1 retrocopy	retro_mmus_947,
Pteropus vampyrus	ENSPVAG00000011615	1 retrocopy	retro_pvam_337,
Sus scrofa	ENSSSCG00000015718	1 retrocopy	retro_sscr_311,