RetrogeneDB ID: retro_meug_1

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold90023:4199..5093(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000001179
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000007370
• Aliases: None
• Description: None

Sequence

>retro_meug_1
GTGAAGGCTGCTATCAAATACGCTCTCAGTGTTGGCTACCGCCACATTGACTGTGCTGCCATCTATGGAAACGAGGCAGA
GATTGGCGAGGCCTTGAAGGAGAATGTGGGCCCTGGAAAGGCTGTTTCCCGCGAAGAAGTGTTTGTGACTTCCAAGCTCT
GGAACACCAAGCACCAGCCAGAGGATGTGGAGCCTGCCCTCAGGAAGACCCTGGCTGACCTCCAGCTGCAGTATCTGGAT
CTCTACCTGATGCACTGGCCCTTTGGCTTTGAGCGGGGGGACAACCCCTTCCCCAAGAATGCTGATGGCACAATGCGCTA
TGACACCATCCACTATAAGGAGACTTGGAAGGCCATGGAGGCGCTGGTGTCCAAGGGGCTGGTGCGGGCCCTGGGCCTCT
CCAACTTCAACAGCCGCCAGATTGATGACATTCTCAGCATGGCCACAGTGCGGCCTGCTGTGCTCCAGGTGGAGAGTCAC
CCTTACCTAGCCCAGAATGAGCTAATTGCTCACTGCCATGAGCGGGGGCTAGAGGTGACAGCCTACAGCCCCCTTGGCTC
CTCAGACCGAGCCTGGCGAGACCCAGCGGAGCCAGTGCTGCTGCAGGAGCCCCTTGTCCTGGAGCTGGCCAAGAAGTATG
GGAAGTCACCAGCCCAGATCCTGCTCAGATGGCAAGTCCAGCGGAAGGTGATCTGTATTCCAAAAAGCGTCACTCCTTCC
CGTATCCTTGAGAACCTCCAGGTTTTTGACTTCACCCTGACGCCAGAGGAGATGAAGCAGCTAGGGGCGCTGAACAAAAA
TTGGCGGTACATCGTGCCCATGATAATGATGGATGGGAAGCGGGTCCCAAGAGACGCAGGACATCCTCTGTATCCCTTCA
ACGAGCCCTTCTAA

Alignment

ORF - retro_meug_1 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.65 %
• Parental protein coverage: 91.38 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VKAAIKYALSVGYRHIDCAAIYGNEAEIGEALKENVGPGKAVSREEVFVTSKLWNTKHQPEDVEPALRKT
          VKAAIKYALSVGYRHIDCAAIYGNEAEIGEALKENVGPGKAVSREEVFVTSKLWNTKHQPEDVEPALRKT
Retrocopy VKAAIKYALSVGYRHIDCAAIYGNEAEIGEALKENVGPGKAVSREEVFVTSKLWNTKHQPEDVEPALRKT

Parental  LADLQLQYLDLYLMHWPFGFERGDNPFPKNADGTMRYDTIHYKETWKAMEALVSKGMVRALGLSNFNSRQ
          LADLQLQYLDLYLMHWPFGFERGDNPFPKNADGTMRYDTIHYKETWKAMEALVSKG.VRALGLSNFNSRQ
Retrocopy LADLQLQYLDLYLMHWPFGFERGDNPFPKNADGTMRYDTIHYKETWKAMEALVSKGLVRALGLSNFNSRQ

Parental  IDDIISMATVRHAVLQVESHPYLAQNELIAHCHERGLEVTAYSPLGSSDRAWRDPAEPVLLQEPLVLELA
          IDDI.SMATVR.AVLQVESHPYLAQNELIAHCHERGLEVTAYSPLGSSDRAWRDPAEPVLLQEPLVLELA
Retrocopy IDDILSMATVRPAVLQVESHPYLAQNELIAHCHERGLEVTAYSPLGSSDRAWRDPAEPVLLQEPLVLELA

Parental  KKYGKSPAQILLRWQVQRKVICIPKSVTPSRILENLQVFDFTLTPEEMKQLGALNKNWRYIVPMIMKDGK
          KKYGKSPAQILLRWQVQRKVICIPKSVTPSRILENLQVFDFTLTPEEMKQLGALNKNWRYIVPMIM.DGK
Retrocopy KKYGKSPAQILLRWQVQRKVICIPKSVTPSRILENLQVFDFTLTPEEMKQLGALNKNWRYIVPMIMMDGK

Parental  RVPRDAGHPLYPFNEPF
          RVPRDAGHPLYPFNEPF
Retrocopy RVPRDAGHPLYPFNEPF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000004549	1 retrocopy	retro_cfam_558,
Callithrix jacchus	ENSCJAG00000013633	2 retrocopies	retro_cjac_3093, retro_cjac_3334,
Echinops telfairi	ENSETEG00000006450	1 retrocopy	retro_etel_1106,
Macropus eugenii	ENSMEUG00000003434	6 retrocopies	retro_meug_1455, retro_meug_1505, retro_meug_1811, retro_meug_1980, retro_meug_486, retro_meug_504,
Macropus eugenii	ENSMEUG00000007370	1 retrocopy	retro_meug_1 ,
Otolemur garnettii	ENSOGAG00000007175	2 retrocopies	retro_ogar_1522, retro_ogar_2582,
Tarsius syrichta	ENSTSYG00000005301	1 retrocopy	retro_tsyr_1409,
Tursiops truncatus	ENSTTRG00000012180	1 retrocopy	retro_ttru_751,