Parental gene: | AKR1A1, ENSCJAG00000013633 |
| Aliases: | None |
| Description: | aldo-keto reductase family 1, member A1 (aldehyde reductase) [Source:HGNC Symbol;Acc:380] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 7:80418506..80439659(+) |
>ENSCJAG00000013633
ATGGCGGTTTCCTGTGTTCTCCTGCACACTGGGCAGAAGATGCCCCTGATTGGTCTGGGTACCTGGAAGAGTGAGCCTGG
TCAGGTAAAAGCAGCTGTTAAGTATGCCCTTAGTGTAGGCTACCGCCACATTGACTGTGCTGCCATCTACGGCAATGAGC
CTGAGATTGGGGAGGCCCTGAAGGAGGACGTGGGACCAGGCAAGGCAGTGCCTCGGGAGGAGCTGTTTGTGACATCCAAG
CTGTGGAACACCAAACACCACCCCAAGGATGTGGAGCCTGCCCTCCAAAAGACTCTGGCTGACCTTCAGCTGGAATATCT
GGACCTGTACCTGATGCACTGGCCTTATGCCTTCGAGCGGGGAGACAATCCCTTCCCCAAGAATGCTGATGGAACTATAC
GCTATGACTCTACCCACTACAAGGAGACTTGGAAGGCTCTGGAGGCACTGGTAGCTAAGGGGCTGGTGCGAGCGCTGGGC
CTGTCCAACTTCAACAGTCGGCAGATCGATGACATACTCAGTGTGGCTTCCGTGCGTCCAGCTGTCTTGCAGGTAAGGAC
AGCAAGCAGNNNNNNNNNNNNNNNNNNAATTGCCCACTGCCAAGCACGTGGCCTGGAGGTAACTGCTTATAGCCCTTTGG
GCTCCTCTGATCGTGCATGGCGTGATCCTAATGAACCTGTCCTGCTGGAGGAACCAGTAGTCCTGGCATTGGCTGAAAAG
TATGGCCGATCTCCAGCTCAGATCTTGCTCAGGTGGCAGGTCCAGCGGAAAGTGATCTGCATCCCCAAAAGTATCACTCC
TTCTCGAATCCTTCAGAACATCAAGGTGTTTGACTTCACCTTTAGCCCAGAAGAGATGAAGCAGCTAAATGCCCTGAACA
AAAATTGGCGATATATTGTGCCTATGCTTATGGTGGATGGGAAAAGAGTCCCAAGGGATGCAGGGCATCCTCTGTACCCC
TTTAATGACCCATAC
ATGGCGGTTTCCTGTGTTCTCCTGCACACTGGGCAGAAGATGCCCCTGATTGGTCTGGGTACCTGGAAGAGTGAGCCTGG
TCAGGTAAAAGCAGCTGTTAAGTATGCCCTTAGTGTAGGCTACCGCCACATTGACTGTGCTGCCATCTACGGCAATGAGC
CTGAGATTGGGGAGGCCCTGAAGGAGGACGTGGGACCAGGCAAGGCAGTGCCTCGGGAGGAGCTGTTTGTGACATCCAAG
CTGTGGAACACCAAACACCACCCCAAGGATGTGGAGCCTGCCCTCCAAAAGACTCTGGCTGACCTTCAGCTGGAATATCT
GGACCTGTACCTGATGCACTGGCCTTATGCCTTCGAGCGGGGAGACAATCCCTTCCCCAAGAATGCTGATGGAACTATAC
GCTATGACTCTACCCACTACAAGGAGACTTGGAAGGCTCTGGAGGCACTGGTAGCTAAGGGGCTGGTGCGAGCGCTGGGC
CTGTCCAACTTCAACAGTCGGCAGATCGATGACATACTCAGTGTGGCTTCCGTGCGTCCAGCTGTCTTGCAGGTAAGGAC
AGCAAGCAGNNNNNNNNNNNNNNNNNNAATTGCCCACTGCCAAGCACGTGGCCTGGAGGTAACTGCTTATAGCCCTTTGG
GCTCCTCTGATCGTGCATGGCGTGATCCTAATGAACCTGTCCTGCTGGAGGAACCAGTAGTCCTGGCATTGGCTGAAAAG
TATGGCCGATCTCCAGCTCAGATCTTGCTCAGGTGGCAGGTCCAGCGGAAAGTGATCTGCATCCCCAAAAGTATCACTCC
TTCTCGAATCCTTCAGAACATCAAGGTGTTTGACTTCACCTTTAGCCCAGAAGAGATGAAGCAGCTAAATGCCCTGAACA
AAAATTGGCGATATATTGTGCCTATGCTTATGGTGGATGGGAAAAGAGTCCCAAGGGATGCAGGGCATCCTCTGTACCCC
TTTAATGACCCATAC
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 15 .15 RPM |
| SRP051959_skeletal_muscle | 2 .12 RPM |
| SRP051959_lymph_node | 8 .68 RPM |
| SRP051959_lung | 8 .38 RPM |
| SRP051959_liver | 47 .37 RPM |
| SRP051959_kidney | 58 .46 RPM |
| SRP051959_heart | 7 .05 RPM |
| SRP051959_colon | 17 .04 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000004549 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000012231 | within_species_paralog | 14 retrogenes | |
| Callithrix jacchus | ENSCJAG00000012250 | within_species_paralog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000012872 | other_paralog | 1 retrogene | |
| Echinops telfairi | ENSETEG00000006450 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000007370 | ortholog_one2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000007175 | ortholog_one2one | 2 retrogenes | |
| Tarsius syrichta | ENSTSYG00000005301 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000012180 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_3093 | 79.65 | 69.23 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_3334 | 86.28 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000013633 retrocopies