RetrogeneDB ID: retro_ggor_200

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 1:43973405..43973612(-)
• Located in intron of: ENSGGOG00000004124

Retrocopy information

• Ensembl ID: ENSGGOG00000026337
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: ENSG00000205542
• Ensembl ID: ENSGGOG00000006450
• Aliases: None
• Description: None

Sequence

>retro_ggor_200
AACTCGGTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTTCTCGCGCGCCTCACTCCGCTTTTCCTCAGCAACTATGTC
TGACAAACCCGATATGGCTGAGATCGAGAAATTTGATAAGTCGAAACTGAAGAAGACAGAGACGCAAGAGAAAAATCCAC
TGCCTTCCAAAGAAACGATTGAACAGGAGAAGCAAGCAGGCGAATCG

Alignment

ORF - retro_ggor_200 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.55 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  NSVVATAQTRLRSYSRASLRFSSATMSDKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEKQAGES
          NSVVATAQTRLRS.SRASLRFSSATMSDKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEKQAGES
Retrocopy NSVVATAQTRLRSFSRASLRFSSATMSDKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEKQAGES

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.05 RPM	139.21 RPM
SRP007412_cerebellum	0.00 RPM	60.75 RPM
SRP007412_heart	0.03 RPM	59.57 RPM
SRP007412_kidney	0.04 RPM	136.81 RPM
SRP007412_liver	0.08 RPM	136.29 RPM
SRP007412_testis	0.10 RPM	70.03 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_200 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_200 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000038488	2 retrocopies	retro_btau_1731, retro_btau_599,
Gorilla gorilla	ENSGGOG00000006450	1 retrocopy	retro_ggor_200 ,
Macaca mulatta	ENSMMUG00000014256	2 retrocopies	retro_mmul_1274, retro_mmul_1890,
Pan troglodytes	ENSPTRG00000028317	4 retrocopies	retro_ptro_1440, retro_ptro_1572, retro_ptro_2864, retro_ptro_77,