RetrogeneDB ID:

retro_etel_397

Retrocopy
location
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:GeneScaffold_6717:259025..259593(-)
Located in intron of:ENSETEG00000000567
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:GAPDH
Ensembl ID:ENSETEG00000013749
Aliases:None
Description:glyceraldehyde-3-phosphate dehydrogenase [Source:HGNC Symbol;Acc:4141]


Retrocopy-Parental alignment summary:






>retro_etel_397
GTAAACGGATCTGGATGCAGTGGGCACCTGGGCACCAGTACTACTGTCAACTCTGGCAAAGTGGACATTGCTGCCATCAA
TGATCCCCTTCATTGACCTGAACAACATTGTCTACATGTTCCAATATAATTCCATCCATGGCAAGTTCAATAGCACCGTC
AAGGCTGAGAACAGGAAGCTTAACATCAACGGGAAATCCATCTCCATCTTCCAGGAGCGAGATCCTGCCAACATCAAGTG
GGGTGAGGCCGGTGCTGAGTATGTCGTAGAGTCCACCGGGGTCTTCACCACTGTAGAGAAGACTGGGGCTCACTTGAAGG
GCGGTGCCAAAAGGGTGATCATCTCTGCCCCTTCTGCCGATGCCCCTTTGTTTGTGATTGCTGTGAACCACGAGAAGTAT
GACAACTCTCTCAAGATGGTCAGCAATACCTCCTGTACCACCAATTGCTTGGCCCCTCCTGGCCAAGGTCATCCATGACA
ACTCTAGCATCGTGGAGGGACTCATGACCACTGTCCATACCATCAGTACCACCCAGAAGACCGTGGATAGCCCTCCAGGA
AACTCTGG

ORF - retro_etel_397 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 77.6 %
Parental protein coverage: 56.5 %
Number of stop codons detected: 0
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalMTGFGRIGRLVTRAAFESGKVDIVAINDP-FIDLHYMVYMFQYDSTHSKFNGAVKGENGKLNINGKAISI
..G.G..G.L.T.....SGKVDI.AINDP.FIDL...VYMFQY.S.H.KFN..VK.EN.KLNINGK.ISI
RetrocopyVNGSGCSGHLGTSTTVNSGKVDIAAINDP>FIDLNNIVYMFQYNSIHGKFNSTVKAENRKLNINGKSISI
ParentalFQERDPANIKWAEAGAEYVVESTGVFTTVEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKI
FQERDPANIKW.EAGAEYVVESTGVFTTVEK.GAHLKGGAKRVIISAPSADAP.FV..VNHEKYDNSLK.
RetrocopyFQERDPANIKWGEAGAEYVVESTGVFTTVEKTGAHLKGGAKRVIISAPSADAPLFVIAVNHEKYDNSLKM
ParentalVSNASCTTN-LAP-LAKVIHDNFGIVEGLMTT-HAITATQKTVDGPSG-KLW
VSN.SCTTN.LAP.LAKVIHDN..IVEGLMTT.H.I..TQKTVD.P.G.KLW
RetrocopyVSNTSCTTNCLAP>LAKVIHDNSSIVEGLMTTVHTISTTQKTVDSPPG<KLW

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide