RetrogeneDB ID:

retro_etel_2158

Retrocopy
location
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:scaffold_80247:1075..1455(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:UBA52
Ensembl ID:ENSETEG00000003392
Aliases:None
Description:ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:HGNC Symbol;Acc:12458]


Retrocopy-Parental alignment summary:






>retro_etel_2158
ATGCACATCTTTGTGAAGACCCTGGCAGGCAAGACCATCACCCTTGAGGGGGAGCCCAGCGACACCATCGAGAATGTCAA
AGCTAAAATCCAAGACAAGGAGGGCATTCCCCCAACCAGCAGCGTCTGATTTTTGCTGGGAAACAGCTGGAGGATGGCCG
CACTCTCGGATTACAACATCCAGAAGAGTCGACCCTGCACTTGGTGCTGCGTCTGCGTGGTGGTATCATCGAGCCGTCCC
TGCACCAGCTGGCCCAGAAGTACAACTGCGACAAGATGATCTGCCACAAGTGGTATGCTCGCCTTCACCCCCGTGCAGTT
AACTGCCGCAAGAAGAAGTGTGGCCACACCAACAACCTGCGTCCCAAGAAGAAGGTCAAA

ORF - retro_etel_2158 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 88.37 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKESTLHL
M.IFVKTL.GKTITLE.EPSDTIENVKAKIQDKEGIPP..QQRLIFAGKQLEDGRTL.......ESTLHL
RetrocopyMHIFVKTLAGKTITLEGEPSDTIENVKAKIQDKEGIPP<NQQRLIFAGKQLEDGRTLG-LQHPEESTLHL
ParentalVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK
VLRLRGGIIEPSL.QLAQKYNCDKMIC.K.YARLHPRAVNCRKKKCGHTNNLRPKKKVK
RetrocopyVLRLRGGIIEPSLHQLAQKYNCDKMICHKWYARLHPRAVNCRKKKCGHTNNLRPKKKVK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Echinops telfairi was not studied using RNA-Seq expression data.