RetrogeneDB ID: retro_etel_20

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_269016:7643..8738(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSETEG00000014896
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSETEG00000019230
• Aliases: None
• Description: None

Sequence

>retro_etel_20
ATGCCCTACCCATACCCAGCGCTCACCCCAGAGCAGAAGAAGGAGCTGTCGGACATTGCCCATCGCATTGTGGCTCCGGG
CAAGGGCATCCTGGCTGCAGATGAGTCCACCGGAAGCATTGCCAAGCGACTGCAGTCCATTGGGACCGAGAACACCGAAG
AGAACCGTCGCTTTTACCGCCAGCTGCTGCTGACCGCTGACGACCGGGTGAACCCCTGCATTGGGGGCGTCATCCTCTTC
CATGAGACTCTCTACCAGAAGGCGGATGATGGGCGCTCCTTTCCCCAAGTTATCAAATCCAAGGGCGGGATCGTGGGCAT
CAAGGTCGACAAGGGTGTGGTGCCCCTGGCAGGAACGAACGGCGAGACCACCACCCAAGGGCTGGACGGGCTGTCTGAGC
GCTGTGCCCAGTACAAGAAAGATGGCGCTGACTTTGCCAAGTGGCGCTGTGTGCTGAAGATTGGTGAACACACCCCTACA
GCCCTCGCCATCATGGAAAATGCCAATGTGCTGGCCCGTTATGCCAGCATCTGCCAGCAGAATGGCATCGTGCCCATTGT
GGAGCCCGAGATCCTCCCCGATGGCGACCATGACCTGAAGCGCTGCCAGTATGTCACTGAGAAGGTGCTGGCTGCCGTCT
ACAAGGCCCTGAGTGACCACCACGTCTACCTGGAAGGCACCTTGCTGAAGCCCAATATGGTCACCCCCGGCCATGCCTGC
ACGCAGAAGTTTTCCCATGAGGAGATTGCCATGGCAACTGTCACCGCATTGCGCCGCACCGTGCCCCCTGCTGTTACCGG
GGTCACCTTCCTGTCTGGAGGCCAGAGCGAGGAGGAGGCGTCCATCAACCTCAACGCCATCAACAAGTGCCCCCTGCTGA
AGCCATGGGCCCTGACCTTCTCCTACGGGCGAGCCCTGCAGGCATCTGCCCTGAAGGCCTGGGGTGGCAAGAAGGAGAAC
CTGAAGGCGGCCCAGGAGGAGTACATCAAGCGAGCCCTGGCCAACAGCCTCGCCTGCCAAGGAAAGTACGCTCCAAGCGG
TCAAGCTGGGGCTGCAGCCAGCGAGTCCCTCTTCGTCTCTAACCACGCCTACTAA

Alignment

ORF - retro_etel_20 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.18 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MPYPYPALTPEQKKELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRV
          MPYPYPALTPEQKKELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRV
Retrocopy MPYPYPALTPEQKKELSDIAHRIVAPGKGILAADESTGSIAKRLQSIGTENTEENRRFYRQLLLTADDRV

Parental  NPCIGGVILFHETLYQKADDGRPFSQVIKSKGGIVGIKXDKGVVPLAGTNGETTTQGLDGLSERCAQYKK
          NPCIGGVILFHETLYQKADDGR.F.QVIKSKGGIVGIK.DKGVVPLAGTNGETTTQGLDGLSERCAQYKK
Retrocopy NPCIGGVILFHETLYQKADDGRSFPQVIKSKGGIVGIKVDKGVVPLAGTNGETTTQGLDGLSERCAQYKK

Parental  DGADFAKWRCVLKIGEHTPTALAIMENANVLARYASICQQNGIVPIVEPEILPDGDHDLKRCQYVTEKVL
          DGADFAKWRCVLKIGEHTPTALAIMENANVLARYASICQQNGIVPIVEPEILPDGDHDLKRCQYVTEKVL
Retrocopy DGADFAKWRCVLKIGEHTPTALAIMENANVLARYASICQQNGIVPIVEPEILPDGDHDLKRCQYVTEKVL

Parental  AAVYKALSDHHVYLEGTLLKPNMVTPGHACTQKFSHEEIAMATVTALRRTVPPAVTGVTFLSGGQSEEEA
          AAVYKALSDHHVYLEGTLLKPNMVTPGHACTQKFSHEEIAMATVTALRRTVPPAVTGVTFLSGGQSEEEA
Retrocopy AAVYKALSDHHVYLEGTLLKPNMVTPGHACTQKFSHEEIAMATVTALRRTVPPAVTGVTFLSGGQSEEEA

Parental  SINLNAINKCPLLKPWALTFSYGRALQASALKAWGGKKENLKAAQEEYIKRALANSLACQGKYAPSGQAG
          SINLNAINKCPLLKPWALTFSYGRALQASALKAWGGKKENLKAAQEEYIKRALANSLACQGKYAPSGQAG
Retrocopy SINLNAINKCPLLKPWALTFSYGRALQASALKAWGGKKENLKAAQEEYIKRALANSLACQGKYAPSGQAG

Parental  AAASESLFVSNHAY
          AAASESLFVSNHAY
Retrocopy AAASESLFVSNHAY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_20 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 17 parental genes, and 32 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000008221	2 retrocopies	retro_cfam_190, retro_cfam_631,
Callithrix jacchus	ENSCJAG00000006874	1 retrocopy	retro_cjac_1803,
Cavia porcellus	ENSCPOG00000007434	1 retrocopy	retro_cpor_951,
Echinops telfairi	ENSETEG00000017395	2 retrocopies	retro_etel_2089, retro_etel_945,
Echinops telfairi	ENSETEG00000019230	1 retrocopy	retro_etel_20 ,
Homo sapiens	ENSG00000149925	1 retrocopy	retro_hsap_740,
Gorilla gorilla	ENSGGOG00000013979	1 retrocopy	retro_ggor_621,
Myotis lucifugus	ENSMLUG00000011210	3 retrocopies	retro_mluc_1172, retro_mluc_2634, retro_mluc_808,
Macaca mulatta	ENSMMUG00000000983	1 retrocopy	retro_mmul_2596,
Monodelphis domestica	ENSMODG00000015696	4 retrocopies	retro_mdom_1236, retro_mdom_1356, retro_mdom_528, retro_mdom_96,
Mus musculus	ENSMUSG00000030695	3 retrocopies	retro_mmus_2160, retro_mmus_42, retro_mmus_90,
Nomascus leucogenys	ENSNLEG00000002152	1 retrocopy	retro_nleu_133,
Oryctolagus cuniculus	ENSOCUG00000006329	1 retrocopy	retro_ocun_1550,
Ochotona princeps	ENSOPRG00000009760	1 retrocopy	retro_opri_914,
Pongo abelii	ENSPPYG00000007244	1 retrocopy	retro_pabe_636,
Pan troglodytes	ENSPTRG00000007983	1 retrocopy	retro_ptro_526,
Rattus norvegicus	ENSRNOG00000023647	7 retrocopies	retro_rnor_1343, retro_rnor_1541, retro_rnor_1796, retro_rnor_1807, retro_rnor_226, retro_rnor_2791, retro_rnor_536,