RetrogeneDB ID:

retro_etel_1015

Retrocopy
location
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:scaffold_200740:12338..13084(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:DNAJA1
Ensembl ID:ENSETEG00000016984
Aliases:None
Description:DnaJ (Hsp40) homolog, subfamily A, member 1 [Source:HGNC Symbol;Acc:5229]


Retrocopy-Parental alignment summary:






>retro_etel_1015
ATGGTGAAAGACACCACTGATGTTTTGGGGGTCAAACCCAGTGCCACCCAGGAAGAGCTGAAAAAAGCTTACCGGAAACT
GGCCTTGAAGTACCATCCTGATAAGAATCCAAGTGAAGGCGAGAAGTTTAAACAGATTTCTCAAGCATATGAGGTGCTTT
CTGATGCCAAGAAAAGAGAATTGTATGACAAAGGAGGCGAGCAGGCCATCAAGGAGCGTGGAGCAGGCGGTGGATTTGGT
TCCCGATGGACATCTTTGATATGTTCTTTGGAGGCGGCGGACGGATGCAGAGAGAAAGGAGAGGAAAAAACGTGGTGCAC
CAACTCTCAGTAACATTAGAAGATTTGTATAATGGTGCAACAAGAAAACTGGCCCTGCAAAAGAATGTGATTTGTGACAA
ATGTGAAGGCCGAGGCGGTAAGAAAGGAGCCATAGAGTGCTGTCCTAACTGCCGTGGTACTGGGATGCAGATACGAATCC
ATCAGATAGGGCCTGGAATGGTGCAGCAAATTCAGTCTGTGTGCATGGAGTGCCAGGGCCAGGGGGAACAGATCAGCCCT
AAAGACAAATGTAAAAGTTGCAATGGAAGGAAGATCGTTCGTGAGAAGATTCTAGAAGTTCATATTGACAAAGGCATGAA
AGACGGCCAGAAGATCACATTCCACGGTGAAGGAGACCAAGAGCCTGGACTGGAGCCAGGAGATATTATTCTTGTTTTAG
ATCAGAAGGACCATGCTGTTTTTACC

ORF - retro_etel_1015 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 94.07 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMVKETTYYDVLGVKPSATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQ
MVK.TT..DVLGVKPSATQEELKKAYRKLALKYHPDKNP.EGEKFKQISQAYEVLSDAKKRELYDKGGEQ
RetrocopyMVKDTT--DVLGVKPSATQEELKKAYRKLALKYHPDKNPSEGEKFKQISQAYEVLSDAKKRELYDKGGEQ
ParentalAIKEGGAGGGFGS-PMDIFDMFFGGGGRMQRERRGKNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEG
AIKE.GAGGGFGS.PMDIFDMFFGGGGRMQRERRGKNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEG
RetrocopyAIKERGAGGGFGS<PMDIFDMFFGGGGRMQRERRGKNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEG
ParentalRGGKKGAV-CCPNCRGTGMPIRIHQIGPGMVQQIKSVCMECQGHGERISPKDRCKSCNGRKIVREKKILE
RGGKKGA..CCPNCRGTGM.IRIHQIGPGMVQQI.SVCMECQG.GE.ISPKD.CKSCNGRKIVRE.KILE
RetrocopyRGGKKGAIECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGQGEQISPKDKCKSCNGRKIVRE-KILE
ParentalVHIDKGMKDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVFT
VHIDKGMKDGQKITFHGEGDQEPGLEPGDII.VLDQKDHAVFT
RetrocopyVHIDKGMKDGQKITFHGEGDQEPGLEPGDIILVLDQKDHAVFT