RetrogeneDB ID: | retro_dnov_1077 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
| Coordinates: | scaffold_143956:39277..39920(+) | ||
| Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
| Parental gene symbol: | AK2 | ||
| Ensembl ID: | ENSDNOG00000014113 | ||
| Aliases: | None | ||
| Description: | adenylate kinase 2 [Source:HGNC Symbol;Acc:362] |
Retrocopy-Parental alignment summary:
>retro_dnov_1077
CCTAATGTGCCTGTGGTGAACCTGAGAAGAGTACCTTGAAGGTATCCGAGTAGGGCTGCTGGGGCCTCCCAGGGCTGGCC
AGGGCACCCAGATATCCAAATTGGCTGAAAACGTCTGTGTTTGACATCTGGCTACTGGGGACTTGCTGAACACCATGGTG
CTTCTAGCTCAGAGCCAATTAAAAAGCTGAAGACAACAGCCGATGCTGGGAAACTGGTGAGAAATGAAATGGCGGCGGAG
CTCATCAAGAAGATTTGGAGACCCCTCCACGCAAGAAAAGTTTTCTTCTGGATGTCTTCCTTTGGACTATGTGGCGGTCA
GAAATGCTCAACGACATCATGAAGAGGAAAGAGAAGTGTAGTTTGTAATTGAATTCAGCATGCCAGACTCTCTGCTTAGC
CAGAGAATCACTGGAAGGCTGATTCACCCCACAAGGGGCCGTTCCTACCATGAGGAGTTCAGCCCCCCAAAGGAGTCTAT
GAAAGATGGTATCACTGGGGAACCTCTGGTCCGCTGATCAGATGATAAGGAGATGGCCTTAAAAATCCACCTGGTTGTGA
ACGACACTCCGCTGGTGGAATACTACAGTAAGCGTGGTATTCACTCCACCACAGACGTGACCCAGGCTTTTGATGTCTTG
TTT
CCTAATGTGCCTGTGGTGAACCTGAGAAGAGTACCTTGAAGGTATCCGAGTAGGGCTGCTGGGGCCTCCCAGGGCTGGCC
AGGGCACCCAGATATCCAAATTGGCTGAAAACGTCTGTGTTTGACATCTGGCTACTGGGGACTTGCTGAACACCATGGTG
CTTCTAGCTCAGAGCCAATTAAAAAGCTGAAGACAACAGCCGATGCTGGGAAACTGGTGAGAAATGAAATGGCGGCGGAG
CTCATCAAGAAGATTTGGAGACCCCTCCACGCAAGAAAAGTTTTCTTCTGGATGTCTTCCTTTGGACTATGTGGCGGTCA
GAAATGCTCAACGACATCATGAAGAGGAAAGAGAAGTGTAGTTTGTAATTGAATTCAGCATGCCAGACTCTCTGCTTAGC
CAGAGAATCACTGGAAGGCTGATTCACCCCACAAGGGGCCGTTCCTACCATGAGGAGTTCAGCCCCCCAAAGGAGTCTAT
GAAAGATGGTATCACTGGGGAACCTCTGGTCCGCTGATCAGATGATAAGGAGATGGCCTTAAAAATCCACCTGGTTGTGA
ACGACACTCCGCTGGTGGAATACTACAGTAAGCGTGGTATTCACTCCACCACAGACGTGACCCAGGCTTTTGATGTCTTG
TTT
ORF - retro_dnov_1077 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 62.22 % |
| Parental protein coverage: | 91.29 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected | 5 |
Retrocopy - Parental Gene Alignment:
| Parental | PNEPAT-EPAR-EYSKGIRAVLLGPPGAGKGTQXXXXXXXXXXCHLATGDMLEAMV-AFGSALGKKLKAT |
| PN.P...EP...EY..GIR..LLGPP.AG.GTQ...........HLATGD.L..MV.A..S...KKLK.T | |
| Retrocopy | PNVPVV<EPEK<EYLEGIRVGLLGPPRAGQGTQISKLAENVCV*HLATGDLLNTMV<ASSSEPIKKLKTT |
| Parental | IDAGKLVSDEMVVELIEK-NLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLNS-VIEFSIPDSLL |
| .DAGKLV..EM..ELI.K..LETPP.K..FLLD.F..T....EML.D.M.KRKEK....VIEFS.PDSLL | |
| Retrocopy | ADAGKLVRNEMAAELIKK<DLETPPRKKSFLLDVFLWTMWRSEMLNDIM-KRKEKCSL<VIEFSMPDSLL |
| Parental | IRRITGRLIHPTSGRTYHKEFSPPKEPMKDDITGEPLVHRSDDNEKALKIRLDSYHTQTIPLVEYYSKRG |
| ..RITGRLIHPT.GR.YH.EFSPPKE.MKD.ITGEPLV..SDD.E.ALKI.L....T...PLVEYYSKRG | |
| Retrocopy | SQRITGRLIHPTRGRSYHEEFSPPKESMKDGITGEPLVR*SDDKEMALKIHLVVNDT---PLVEYYSKRG |
| Parental | IHSAIDATQTPDVVF |
| IHS..D.TQ..DV.F | |
| Retrocopy | IHSTTDVTQAFDVLF |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP012922_ascending_colon | 0 .00 RPM | 73 .31 RPM |
| SRP012922_cerebellum | 0 .00 RPM | 16 .77 RPM |
| SRP012922_heart | 0 .23 RPM | 23 .20 RPM |
| SRP012922_kidney | 0 .00 RPM | 20 .53 RPM |
| SRP012922_liver | 0 .00 RPM | 146 .76 RPM |
| SRP012922_lung | 0 .00 RPM | 13 .90 RPM |
| SRP012922_quadricep_muscle | 0 .00 RPM | 16 .10 RPM |
| SRP012922_spleen | 0 .11 RPM | 23 .01 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_1077 was not experimentally validated.