RetrogeneDB ID:

retro_dmel_44

Retrocopy
location
Organism:Fruit fly (Drosophila melanogaster)
Coordinates:2L:132482..133682(+)
Located in intron of:FBgn0031228
Retrocopy
information
Ensembl ID:FBgn0001142
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:Gs2
Ensembl ID:FBgn0001145
Aliases:None
Description:Glutamine synthetase 2 [Source:FlyBase gene name;Acc:FBgn0001145]


Retrocopy-Parental alignment summary:






>retro_dmel_44
ATGGCACTACGCGTGGCAGGACTCTTCCTGAAGAAGGAGCTGGTGGCTCCCGCAACACAGCAGCTGCGTCTGCTGCGTAC
TGGCAATACCACCCGCTCCCAGTTCTTGGCCAACTCCCCCAACACGGCTCTAGACAAGAGCATTCTGCAGAGGTACCGCA
ACCTGGAAACGCCGGCCAATCGAGTGCAGGCTACTTACTTATGGATCGACGGTACCGGCGAGAACATTCGCCTCAAGGAT
CGCGTTTTGGACAAAGTACCCAGCTCCGTGGAGGACTTGCCGGATTGGCAGTACGACGGCAGTTCCACCTACCAGGCCCA
TGGCGAGAACTCGGACACCACGCTCAAGCCACGCGCCATATATCGCGATCCCTTTAAGCCGGGAAAGAACGACGTAATTG
TCCTGTGCGACACCTACAGCGCCGACGGCAAGCCGACGGCGTCCAACAAGCGTGCCGCGTTCCAGGCAGCCATTGACCTA
ATTAGCGATCAGGAGCCCTGGTTCGGCATTGAGCAAGAATACACTTTATTAGACGTGGACGGACGTCCCTTCGGCTGGCC
GGAGAACGGTTTCCCAGCCCCACAAGGTCCTTACTACTGCGGCGTGGGAGCTGACCGTGTGTACGCTCGCGATCTTGTGG
AGGCCCACGTCGTGGCCTGCCTGTATGCTGGGATCGACTTCGCCGGCACCAATGCCGAGGTAATGCCCGCGCAGTGGGAG
TTCCAAATTGGTCCAGCCGGGATTAAGGCATGTGACGATTTATGGGTGTCGCGATATATTTTGCAGCGCATAGCTGAGGA
GTATGGCGTAGTGGTCACCTTTGACCCCAAACCGATGGAGGGTCAGTGGAACGGAGCCGGCGCGCATACCAACTTTTCCA
CAAAGGAGATGCGTGCTGATGGCGGAATCAAGGCCATCGAGGAAGCTATCGAGAAGCTGAGCAAGCGCCACGAGCGGCAC
ATCAAGGCATACGACCCCAAGGAAGGCAAAGACAATGAACGGCGCCTCGTGGGACGTCTTGAGACTTCTAGCATCGATAA
GTTTTCTTGGGGCGTGGCCAACCGGGCCGTAAGTGTGCGAGTGCCGCGTGGCGTTGCGACGGCCGGCAAAGGATACCTCG
AAGACCGGCGGCCAAGCTCCAACTGTGATCCCTACGCCGTGTGCAACGCCATTGTTCGCACCTGCCTGCTCAACGAGTAG

ORF - retro_dmel_44 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 64.95 %
Parental protein coverage: 99.46 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalSAILEDSPNARINKTILDRYLSLPLQENIVQATYVWIDGTGEDLRCKDRTLDFIPQSPKELPVWNYDGSS
S..L..SPN....K.IL.RY..L....N.VQATY.WIDGTGE..R.KDR.LD..P.S...LP.W.YDGSS
RetrocopySQFLANSPNTALDKSILQRYRNLETPANRVQATYLWIDGTGENIRLKDRVLDKVPSSVEDLPDWQYDGSS
ParentalCYQAEGSNSDTYLYPVAIYKDPFRRG-NNILVMCDTYKFDGTPTDTNKRKTCLEVANKCAAEEPWFGIEQ
.YQA.G.NSDT.L.P.AIY.DPF..G.N...V.CDTY..DG.PT..NKR.............EPWFGIEQ
RetrocopyTYQAHGENSDTTLKPRAIYRDPFKPGKNDVIVLCDTYSADGKPTASNKRAAFQAAIDLISDQEPWFGIEQ
ParentalEYTFLDFDGHPLGWPKNGFPGPQGPYYCGVGANKVYARDIVDAHYRACLYAGIKVSGTNAEVMPAQWEFQ
EYT.LD.DG.P.GWP.NGFP.PQGPYYCGVGA..VYARD.V.AH..ACLYAGI...GTNAEVMPAQWEFQ
RetrocopyEYTLLDVDGRPFGWPENGFPAPQGPYYCGVGADRVYARDLVEAHVVACLYAGIDFAGTNAEVMPAQWEFQ
ParentalVGPCEGISIGDDLWMARFLLHRISEEFGIVSTLDPKPMPGDWNGAGAHTNVSTKAMREDGGIRDIEKAVA
.GP..GI...DDLW..R..L.RI.EE.G.V.T.DPKPM.G.WNGAGAHTN.STK.MR.DGGI..IE.A..
RetrocopyIGPA-GIKACDDLWVSRYILQRIAEEYGVVVTFDPKPMEGQWNGAGAHTNFSTKEMRADGGIKAIEEAIE
ParentalKLSKCHERHIRAYDPKQGQDNARRLTGKHETSSINDFSAGVANRGCSIRIPRGVNDDGKGYFEDRRPSSN
KLSK.HERHI.AYDPK.G.DN.RRL.G..ETSSI..FS.GVANR..S.R.PRGV...GKGY.EDRRPSSN
RetrocopyKLSKRHERHIKAYDPKEGKDNERRLVGRLETSSIDKFSWGVANRAVSVRVPRGVATAGKGYLEDRRPSSN
ParentalCDPYSVVEAILRTICLDE
CDPY.V..AI.RT..L.E
RetrocopyCDPYAVCNAIVRTCLLNE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Drosophila melanogaster was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Drosophila melanogaster was not studied using ChIP-Seq data.

EST - click to see more details

4 EST(s) were mapped to retro_dmel_44 retrocopy
EST ID Start End Identity Match Mis-match Score
CO269765 132490 132670 98.4 180 0 179
CO323998 132774 133201 100 427 0 427
EC074719 132774 133202 100 428 0 428
EC220169 132491 132663 100 172 0 172

TSS - click to see more details

Drosophila melanogaster was not studied using FANTOM5 data.

Lab - click to see more details

retro_dmel_44 was not experimentally validated.

Retrocopy orthology:
Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 24 parental genes, and 57 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000136314 retrocopies
retro_btau_1050, retro_btau_1474, retro_btau_336, retro_btau_824,
Canis familiaris ENSCAFG000000131022 retrocopies
retro_cfam_1691, retro_cfam_2143,
Callithrix jacchus ENSCJAG000000046541 retrocopy
retro_cjac_2837,
Dasypus novemcinctus ENSDNOG000000139484 retrocopies
retro_dnov_1386, retro_dnov_1870, retro_dnov_2393, retro_dnov_842,
Equus caballus ENSECAG000000158651 retrocopy
retro_ecab_979,
Echinops telfairi ENSETEG000000083293 retrocopies
retro_etel_143, retro_etel_189, retro_etel_1968,
Felis catus ENSFCAG000000105511 retrocopy
retro_fcat_1811,
Homo sapiens ENSG000001358214 retrocopies
retro_hsap_2364, retro_hsap_3255, retro_hsap_848, retro_hsap_935,
Gorilla gorilla ENSGGOG000000247123 retrocopies
retro_ggor_1794, retro_ggor_2216, retro_ggor_754,
Loxodonta africana ENSLAFG000000007001 retrocopy
retro_lafr_196,
Macropus eugenii ENSMEUG000000017746 retrocopies
retro_meug_1013, retro_meug_1394, retro_meug_1561, retro_meug_409, retro_meug_433, retro_meug_746,
Macaca mulatta ENSMMUG000000228842 retrocopies
retro_mmul_2047, retro_mmul_954,
Monodelphis domestica ENSMODG000000067874 retrocopies
retro_mdom_1268, retro_mdom_488, retro_mdom_823, retro_mdom_892,
Mus musculus ENSMUSG000000264733 retrocopies
retro_mmus_1730, retro_mmus_1767, retro_mmus_696,
Nomascus leucogenys ENSNLEG000000180073 retrocopies
retro_nleu_1388, retro_nleu_293, retro_nleu_416,
Pongo abelii ENSPPYG000000004401 retrocopy
retro_pabe_2698,
Pan troglodytes ENSPTRG000000017514 retrocopies
retro_ptro_2201, retro_ptro_2823, retro_ptro_589, retro_ptro_647,
Sarcophilus harrisii ENSSHAG000000001161 retrocopy
retro_shar_553,
Sus scrofa ENSSSCG000000155451 retrocopy
retro_sscr_726,
Ictidomys tridecemlineatus ENSSTOG000000145292 retrocopies
retro_itri_1083, retro_itri_743,
Tupaia belangeri ENSTBEG000000035223 retrocopies
retro_tbel_2230, retro_tbel_3079, retro_tbel_3992,
Tarsius syrichta ENSTSYG000000020661 retrocopy
retro_tsyr_385,
Tursiops truncatus ENSTTRG000000107811 retrocopy
retro_ttru_543,
Drosophila melanogaster FBgn0001145 1 retrocopy
retro_dmel_44 ,




Copyright © RetrogeneDB 2014-2017