RetrogeneDB ID: retro_dmel_25

Retrocopy location

• Organism: Fruit fly (Drosophila melanogaster)
• Coordinates: 3L:10406136..10407672(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: FBgn0036082
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: ari-1
• Ensembl ID: FBgn0017418
• Aliases: None
• Description: ariadne [Source:FlyBase gene name;Acc:FBgn0017418]

Sequence

>retro_dmel_25
ATGAATTCCGAAATGGAATTCTCGGATGAGGACCACGGTGACTCGCATCGGTCGCTTCTCACTCACATGAGTTGCGAAAA
TGACAGCGACAGCGAGGACACCTGCACGGAAATCCTTTTGCCGGAAAATTCCAACAGTCCCGAAACGGAGGACTTTGTGT
ACAAGGTCCTTTCGGTGGACCAGATTGTTCAGCATCAGCGTAACATCATCGATGAGGTGAATAATGTCCTGAATTTGCCA
CCGCAAGTCACGCGTATTATCCTAAATCACTTCAAATGGGACAAAGAGAGCTTGTTCGAAAATTATTTCGAGAGCAATCC
GAAGGACTTCTTTCAGCGTGCCCATGTGTTGAATCCCTTTGAGAAGAAGATTGAACGCGAGTCTGCGGCGTCTACATCCT
GTGCCATACCTCAGCTCTGTGGCATTTGCTTTTGTTCTTGCGATGAGCTCATAGGTTTGGGCTGTGGTCACAACTTTTGT
GCCGCCTGCTGGAAACAATATTTGGCCAATAAGACGTGTAGCGAGGGCTTGGCCAATACCATCAAATGTCCAGCGGCCAA
CTGCGAGATCCTGGTGGATTATATATCCTTTCTGAAACTTGCCGATGATTCAGAGGTTGTCGAGCGATATCAGCAGCTCA
TCACCAACACGTTTGTGGAATGCAACATGCTGATGCGATGGTGCCCCGCCCCCAATTGCAGCCATGCCGTCAAGGCCGTT
TGTGCTGAACCACGAGCAGTCCTTTGCAAATGTGGGCATGAGTTTTGCTTTGCTTGTGGCGAAAATTGGCATGAACCCGC
CAGCTGCAGTTCGCTCAAGAAGTGGGTGAAAAAATGTCTTGAGGACTCGGAGACATCGAATTGGATTGCCCAGAACACGA
AGGAGTGTCCCAAGTGCAATGTTACCATCGAGAAGGATGGTGGTTGCAATCATATGGTATGCAAGAATCCATCCTGCCGT
TATGATTTCTGCTGGGTATGCCTTGGATCCTGGGAGCCACATGGTTCGTCCTGGTACAGTTGCAATCGCTTCGACGAGGA
GGAAGCGAAACAGGCCAGATTGGCTCAGCAAAAATATCGCTCTTCAATGGCCCGATATCTGCACTATTACAATCGTTATA
GCAACCACATGCAAAGTTTGAAAATGGAAAATAAATTATATTCCAATATTCAGGCCAAAATGGATGACATGCAGGAGGAG
ATGAGCTGGATTGAGGTTCAGTTTCTGCGTGATGCCGTCGATGTCTTATGCCAATGTCGAACCACTCTGATGTACAGCTA
TGTGTTTGCATTTTATTTGATGAACAACAATCAGAAGATCATATTCGAGGATAATCAGAAGGACATGGAAATGGCCACAG
AAAAGCTGTCCGAGTGCTTGGAGCGAGAGATCACTGTCAAGAATATCTATGAAGTTAAACAAAAGGTTCTGGACTTATCG
CACTATTGCCAAAAACGACGACATGTCCTCCTTTGCCATGTGAGGGAGGGATACGAAAATGACTGGTGGGAATTTAAAGA
AGAGACCACTACATAA

Alignment

ORF - retro_dmel_25 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 66.04 %
• Parental protein coverage: 73.76 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  CEICFSQLPPDSMAGLECGHRFCMPCWHEYLSTKIVAEGLGQTISCAAHGCDILVDDVTVANLVTDARVR
          C.ICF.....D...GL.CGH.FC..CW..YL..K...EGL..TI.C.A..C.ILVD......L..D..V.
Retrocopy CGICFCSC--DELIGLGCGHNFCAACWKQYLANKTCSEGLANTIKCPAANCEILVDYISFLKLADDSEVV

Parental  VKYQQLITNSFVECNQLLRWCPSVDCTYAVKVPYAEPRRVHCKCGHVFCFACGENWHDPVKCRWLKKWIK
          ..YQQLITN.FVECN.L.RWCP...C..AVK...AEPR.V.CKCGH.FCFACGENWH.P..C..LKKW.K
Retrocopy ERYQQLITNTFVECNMLMRWCPAPNCSHAVKAVCAEPRAVLCKCGHEFCFACGENWHEPASCSSLKKWVK

Parental  KCDDDSETSNWIAANTKECPRCSVTIEKDGGCNHMVCKNQNCKNEFCWVCLGSWEPHGSSWYNCNRYDED
          KC..DSETSNWIA.NTKECP.C.VTIEKDGGCNHMVCKN..C...FCWVCLGSWEPHGSSWY.CNR.DE.
Retrocopy KCLEDSETSNWIAQNTKECPKCNVTIEKDGGCNHMVCKNPSCRYDFCWVCLGSWEPHGSSWYSCNRFDEE

Parental  EAKTARDAQEKLRSSLARYLHYYNRYMNHMQSMKFENKLYASVKQKMEEMQQHNMSWIEVQFLKKAVDIL
          EAK.AR.AQ.K.RSS.ARYLHYYNRY.NHMQS.K.ENKLY.....KM..MQ...MSWIEVQFL..AVD.L
Retrocopy EAKQARLAQQKYRSSMARYLHYYNRYSNHMQSLKMENKLYSNIQAKMDDMQEE-MSWIEVQFLRDAVDVL

Parental  CQCRQTLMYTYVFAYYLKKNNQSMIFEDNQKDLESATEMLSEYLERDITSENLADIKQKVQDKYRYCEKR
          CQCR.TLMY.YVFA.YL..NNQ..IFEDNQKD.E.ATE.LSE.LER.IT..N....KQKV.D...YC.KR
Retrocopy CQCRTTLMYSYVFAFYLMNNNQKIIFEDNQKDMEMATEKLSECLEREITVKNIYEVKQKVLDLSHYCQKR

Parental  CSVLLKHVHEGYDKEWWEYTE
          ..VLL.HV.EGY...WWE..E
Retrocopy RHVLLCHVREGYENDWWEFKE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Drosophila melanogaster was not studied using RNA-Seq expression data.

ChIP-Seq

Drosophila melanogaster was not studied using ChIP-Seq data.

EST

1 EST(s) were mapped to retro_dmel_25 retrocopy

EST ID	Start	End	Identity	Match	Mis-match	Score
BF506265	10406103	10406811	99.8	706	2	704

TSS

Drosophila melanogaster was not studied using FANTOM5 data.

Lab

retro_dmel_25 was not experimentally validated.

Homology

Retrocopy orthology:

Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000012095	1 retrocopy	retro_ogar_3490,
Sus scrofa	ENSSSCG00000001922	2 retrocopies	retro_sscr_142, retro_sscr_200,
Drosophila melanogaster	FBgn0017418	1 retrocopy	retro_dmel_25 ,