Parental gene:

SOD1, ENSTSYG00000011342

Aliases:None
Description:superoxide dismutase 1, soluble [Source:HGNC Symbol;Acc:11179]
Organism:Tarsier (Tarsius syrichta)
Coordinates:GeneScaffold_4292:193..7286(+)


>ENSTSYG00000011342
ATGCCGATGAAGGCCGTGTGCGTGTTGAGGGGCGACGGCCCGGTGCGGGGCACCATCAACTTCGAGCAGAAGGAAAATGG
GCCAGTTGTGGTATCAGGATGCATTACAGGACTGACTGAGGGCCTGCATGGATTCCACGTTCACCAGTTTGGAGATAACA
CACAAGGCTGTACCAGTGCAGGTCCTCACTTTAATCCTCTATCCAAAAAACATGGTGGGCCAAAGGACCAAGAAAGGCAT
GTTGGAGACCTGGGCAATGTGACTGCTGGCAAAGATGGTGTGGCCAATGTGTTGATTGAAGATTCTCTAATCTCACTCTT
TGGAGACCATTCCATCATTGGTCGCACAATGGTGGTTCATGAAAAAGAAGATGACTTGGGCAAAGGTGACAATGAAGAAA
GTACAAAGACTGGAAACGCTGGAAGTCGTTTGGCTTGTGGTGTCATTGGGATCGCTCAGTAA

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000018854 ortholog_one2many 1 retrogene
retro_btau_40,
Canis familiaris ENSCAFG00000008859 ortholog_one2one 1 retrogene
retro_cfam_1515,
Callithrix jacchus ENSCJAG00000008983 ortholog_one2one 3 retrogenes
retro_cjac_1477, retro_cjac_1986, retro_cjac_652,
Dasypus novemcinctus ENSDNOG00000006512 ortholog_one2one 1 retrogene
retro_dnov_816,
Dipodomys ordii ENSDORG00000013850 ortholog_one2one 3 retrogenes
retro_dord_217, retro_dord_41, retro_dord_603,
Erinaceus europaeus ENSEEUG00000015905 ortholog_one2one 1 retrogene
retro_eeur_305,
Felis catus ENSFCAG00000002225 ortholog_one2one 2 retrogenes
retro_fcat_1260, retro_fcat_422,
Homo sapiens ENSG00000142168 ortholog_one2one 3 retrogenes
retro_hsap_1637, retro_hsap_3591, retro_hsap_4117,
Gorilla gorilla ENSGGOG00000015554 ortholog_one2one 4 retrogenes
retro_ggor_1238, retro_ggor_2421, retro_ggor_2690, retro_ggor_2763,
Latimeria chalumnae ENSLACG00000013736 ortholog_one2one 1 retrogene
retro_lcha_51,
Loxodonta africana ENSLAFG00000010708 ortholog_one2many 1 retrogene
retro_lafr_127,
Microcebus murinus ENSMICG00000005253 ortholog_one2one 2 retrogenes
retro_mmur_378, retro_mmur_573,
Macaca mulatta ENSMMUG00000001711 ortholog_one2one 2 retrogenes
retro_mmul_1563, retro_mmul_2372,
Monodelphis domestica ENSMODG00000021041 ortholog_one2one 1 retrogene
retro_mdom_1376,
Mus musculus ENSMUSG00000022982 ortholog_one2one 1 retrogene
retro_mmus_2742,
Nomascus leucogenys ENSNLEG00000003545 ortholog_one2one 3 retrogenes
retro_nleu_1324, retro_nleu_302, retro_nleu_584,
Otolemur garnettii ENSOGAG00000014646 ortholog_one2many 3 retrogenes
retro_ogar_27, retro_ogar_3364, retro_ogar_702,
Ochotona princeps ENSOPRG00000007008 ortholog_one2one 1 retrogene
retro_opri_1190,
Pongo abelii ENSPPYG00000011354 ortholog_one2one 2 retrogenes
retro_pabe_1353, retro_pabe_3370,
Pan troglodytes ENSPTRG00000013847 ortholog_one2one 3 retrogenes
retro_ptro_1107, retro_ptro_2431, retro_ptro_2796,
Pteropus vampyrus ENSPVAG00000005216 ortholog_one2one 2 retrogenes
retro_pvam_281, retro_pvam_563,
Sarcophilus harrisii ENSSHAG00000004195 ortholog_one2one 1 retrogene
retro_shar_278,
Ictidomys tridecemlineatus ENSSTOG00000004434 ortholog_one2one 1 retrogene
retro_itri_1342,
Tupaia belangeri ENSTBEG00000007333 ortholog_one2one 4 retrogenes
retro_tbel_2131, retro_tbel_3531, retro_tbel_3611, retro_tbel_429,
Vicugna pacos ENSVPAG00000012396 ortholog_one2one 1 retrogene
retro_vpac_168,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_tsyr_365 74.60 81.70
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2. retro_tsyr_402 69.48 100.00
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3. retro_tsyr_823 79.38 63.40
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4. retro_tsyr_831 71.24 100.00
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5. retro_tsyr_1055 75.33 95.42
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6. retro_tsyr_1064 68.83 100.00
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7. retro_tsyr_1082 71.24 100.00
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8. retro_tsyr_1112 84.95 60.78
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9. retro_tsyr_1143 68.83 100.00
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10. retro_tsyr_1176 69.48 100.00
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11. retro_tsyr_1262 68.83 50.33
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12. retro_tsyr_1275 73.96 62.09
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13. retro_tsyr_1295 72.73 100.00
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14. retro_tsyr_1369 71.24 100.00
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15. retro_tsyr_1378 69.93 100.00
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16. retro_tsyr_1590 62.12 84.97
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17. retro_tsyr_2107 56.52 60.13
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Download FASTA sequences of all ENSTSYG00000011342 retrocopies