Parental gene:

ENSTBEG00000013539

Aliases:None
Description:None
Organism:Treeshrew (Tupaia belangeri)
Coordinates:GeneScaffold_2336:129307..130639(+)


>ENSTBEG00000013539
GATGAGATGTTCTCCGACATTTACAAGATCCAGGAGATCGCGGACGGGCTGTGCCTGGAGGTGGAGGGGAAGATGGTCAG
TAGGACAGAGGGTAACATTGATGACTCGCTCATTGGTGGAAATGCCTCCGCTGAAGGCCCTGAGGGCGAAGGTACCGAAA
GCACAGTAGTCACTGGTGTTGACATTGTCATGAACCATCACTTGCAGGAAACCAGCTTCACAAAAGAAGCCTACAAGAAG
TACATCAAAGATTACATGAAATCAATCAAAGGCAAACTTGAAGAACAGAGACCAGAAAGAGTAAAACCATTTATGACAGG
GGCTGCAGAACAAATCAAGCATATTCTTGCTAATTTCAAAAACTACCAG

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000006531 ortholog_one2many 2 retrogenes
retro_acar_156, retro_acar_58,
Bos taurus ENSBTAG00000010156 possible_ortholog 2 retrogenes
retro_btau_21, retro_btau_235,
Callithrix jacchus ENSCJAG00000019229 possible_ortholog 2 retrogenes
retro_cjac_1786, retro_cjac_314,
Dasypus novemcinctus ENSDNOG00000000653 ortholog_one2many 22 retrogenes
retro_dnov_1071, retro_dnov_1202, retro_dnov_1349, retro_dnov_1705, retro_dnov_2082, retro_dnov_2283, retro_dnov_2305, retro_dnov_237, retro_dnov_2412, retro_dnov_2531, retro_dnov_2687, retro_dnov_276, retro_dnov_342, retro_dnov_397, retro_dnov_417, retro_dnov_453, retro_dnov_71, retro_dnov_847, retro_dnov_870, retro_dnov_909, retro_dnov_934, retro_dnov_981,
Latimeria chalumnae ENSLACG00000004306 ortholog_one2many 2 retrogenes
retro_lcha_24, retro_lcha_34,
Loxodonta africana ENSLAFG00000021740 possible_ortholog 7 retrogenes
retro_lafr_1008, retro_lafr_1195, retro_lafr_1211, retro_lafr_1247, retro_lafr_347, retro_lafr_484, retro_lafr_883,
Monodelphis domestica ENSMODG00000014940 possible_ortholog 2 retrogenes
retro_mdom_128, retro_mdom_9,
Nomascus leucogenys ENSNLEG00000002108 possible_ortholog 8 retrogenes
retro_nleu_1262, retro_nleu_1281, retro_nleu_1637, retro_nleu_2127, retro_nleu_2539, retro_nleu_2540, retro_nleu_368, retro_nleu_9,
Otolemur garnettii ENSOGAG00000012523 possible_ortholog 20 retrogenes
retro_ogar_1141, retro_ogar_1249, retro_ogar_1538, retro_ogar_1682, retro_ogar_1754, retro_ogar_2193, retro_ogar_2225, retro_ogar_2298, retro_ogar_2331, retro_ogar_2594, retro_ogar_2668, retro_ogar_2819, retro_ogar_2893, retro_ogar_2944, retro_ogar_344, retro_ogar_350, retro_ogar_3503, retro_ogar_622, retro_ogar_746, retro_ogar_906,
Procavia capensis ENSPCAG00000016228 possible_ortholog 3 retrogenes
retro_pcap_245, retro_pcap_351, retro_pcap_357,
Sorex araneus ENSSARG00000009319 possible_ortholog 1 retrogene
retro_sara_113,
Sarcophilus harrisii ENSSHAG00000001545 possible_ortholog 1 retrogene
retro_shar_227,
Tarsius syrichta ENSTSYG00000003160 possible_ortholog 13 retrogenes
retro_tsyr_1054, retro_tsyr_1291, retro_tsyr_1549, retro_tsyr_1601, retro_tsyr_2120, retro_tsyr_314, retro_tsyr_655, retro_tsyr_763, retro_tsyr_781, retro_tsyr_784, retro_tsyr_890, retro_tsyr_958, retro_tsyr_990,
Vicugna pacos ENSVPAG00000008472 possible_ortholog 5 retrogenes
retro_vpac_1, retro_vpac_101, retro_vpac_159, retro_vpac_539, retro_vpac_552,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_tbel_459 63.93 95.93
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2. retro_tbel_830 75.00 100.00
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3. retro_tbel_1009 77.19 91.06
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4. retro_tbel_1556 86.89 99.19
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5. retro_tbel_1634 76.23 99.19
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6. retro_tbel_1724 95.12 100.00
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7. retro_tbel_1725 96.77 100.00
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8. retro_tbel_2086 84.30 96.75
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9. retro_tbel_2100 79.37 100.00
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10. retro_tbel_2265 83.74 100.00
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11. retro_tbel_2278 81.30 100.00
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12. retro_tbel_2464 91.13 100.00
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13. retro_tbel_2550 91.87 100.00
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14. retro_tbel_2767 86.18 100.00
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15. retro_tbel_3238 88.10 100.00
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16. retro_tbel_3354 94.31 100.00
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17. retro_tbel_3403 61.79 99.19
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18. retro_tbel_3410 86.40 100.00
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19. retro_tbel_3592 90.24 100.00
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20. retro_tbel_3888 65.83 96.75
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21. retro_tbel_4226 95.93 100.00
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22. retro_tbel_4400 80.99 97.56
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23. retro_tbel_4526 66.67 87.80
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24. retro_tbel_4641 83.06 100.00
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25. retro_tbel_4733 93.55 100.00
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Download FASTA sequences of all ENSTBEG00000013539 retrocopies