RetrogeneDB ID:

retro_nleu_1281

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397287.1:1358325..1358729(-)
Located in intron of:ENSNLEG00000008717
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ENSG00000133112
Ensembl ID:ENSNLEG00000002108
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_1281
CTAGTCTCCAACACTTACAATATCTGGGAGATTGCAGACTGGCTGTGCCTGGAAGTGGGACGGGGGGGTGGGGAGGAAGA
TGGTCAGTAGGACAGAGGGTAACATTGACAGAAATGCCTCCACAGAAGGCACTGAGGGTGAAGGTACCGAAAGCACATTA
ATCACTTATGTTGATACTGTCATGAACCATCACTTGCAGGAAACAAGCTTCACAAAAGAAGCCTACAAGAAGTACATCAA
AGATTACATAAAATCAATCAAAGGCCAACTTGAAGAACAGAGACCTAAACAGTAAAACCTTTTATGACAGAAGCTGTGGA
ACAAACCAAGCACATTCTACTAATTTCAACAACTACCAGTTTTTTACCAGTAAAAACGTGAATCCAGATGGCATGGTTGC
TCTA

ORF - retro_nleu_1281 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 69.06 %
Parental protein coverage: 78.61 %
Number of stop codons detected: 1
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalMFSDIYKIREIADGLCLEVEGKMVSRTEGNID-DSLIGGNASAEGPEGEGTESTVITGVDIVMNHHLQET
..S..Y.I.EIAD.LCLEV.G.......G..D....I..NAS.EG.EGEGTEST.IT.VD.VMNHHLQET
RetrocopyLVSNTYNIWEIADWLCLEV-GRGGGEEDGQ*D>EGNIDRNASTEGTEGEGTESTLITYVDTVMNHHLQET
ParentalSFTKEAYKKYIKDYMKSIKGKLEEQRPER-VKPFMTGAAEQIKHIL-ANFKNYQFFIGENMNPDGMVAL
SFTKEAYKKYIKDY.KSIKG.LEEQRP...VKPFMT.A.EQ.KHIL..NF.NYQFF...N.NPDGMVAL
RetrocopySFTKEAYKKYIKDYIKSIKGQLEEQRPKQ<VKPFMTEAVEQTKHIL<TNFNNYQFFTSKNVNPDGMVAL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Nomascus leucogenys was not studied using RNA-Seq expression data.