Parental gene: | MEST, ENSSTOG00000020977 |
| Aliases: | None |
| Description: | mesoderm specific transcript [Source:HGNC Symbol;Acc:7028] |
| Organism: | Squirrel (Ictidomys tridecemlineatus) |
| Coordinates: | JH393389.1:4783988..4795247(-) |
>ENSSTOG00000020977
ATGGTGCGCCGAGATCGCCTCCGCAGGATGAGGGAGTGGTGGGTCCAGGTGGGGCTACTGGCCGTGCCCCTGCTGGCCGC
GTACCTGCACATCCCACCCCCTCAGCTCTCTCCTGCGCTGCACTCATGGAAGACTTCTGGCAAGTTTTTCACCTACAAGG
GACTGCGCATCTTCTACCAGGACTCTGTGGGTGTAGTTGGCAGTCCTGAGATAGTTGTGCTTTTACATGGCTTCCCAACT
TCCAGCTATGACTGGTACAAGATTTGGGAAGGTCTGACCCTGAGGTTTCATCGAGTGATTGCCCTTGACTTCTTAGGCTT
TGGCTTCAGTGACAAACCGAGACCACACCACTATTCCATATTTGAGCAGGCCAGCATCGTGGAGGCGCTTTTGCGCCATC
TAGGACTCCAGAACCGTAGGATCAACCTGTTGTCTCACGACTATGGAGACATTGTTGCTCAGGAGCTGCTGTATAGGTAC
AAGCAAAATCGATCTGGCCGGCTTACTATAAAGAGTCTCTGTCTGTCAAATGGAGGTATCTTTCCTGAGACTCACCGGCC
TCTCCTTCTCCAAAAGCTACTTAAAGATGGAGGTGTGCTGTCACCCATCCTCACGAGGTTGATGAACTTCTTTGTATTTT
CTCGAGGTCTTACTCCCGTCTTTGGACCATACACTCGACCCTCCGAAAGTGAGCTGTGGGATATGTGGGCAGGGATCCGA
AACAATGACGGGAACTTGGTGATTGACAGTCTCTTACAGTACATTAATCAGAGGAAGAAGTTTAGAAGACGCTGGGTGGG
AGCTCTTGCCTCTGTAACTATTCCCATTCATTTTATCTATGGGCCATTGGATCCTATAAATCCCTATCCAGAGTTTTTGG
AGCTGTACAGGAAAACGCTGCCGCGGTCCACAGTGTCGATTCTGGATGACCACATTAGCCACTACCCACAGCTAGAGGAT
CCCATGGGCTTCTTGAATGCATATATGGGCTTCATCAACTCCTTCTGA
ATGGTGCGCCGAGATCGCCTCCGCAGGATGAGGGAGTGGTGGGTCCAGGTGGGGCTACTGGCCGTGCCCCTGCTGGCCGC
GTACCTGCACATCCCACCCCCTCAGCTCTCTCCTGCGCTGCACTCATGGAAGACTTCTGGCAAGTTTTTCACCTACAAGG
GACTGCGCATCTTCTACCAGGACTCTGTGGGTGTAGTTGGCAGTCCTGAGATAGTTGTGCTTTTACATGGCTTCCCAACT
TCCAGCTATGACTGGTACAAGATTTGGGAAGGTCTGACCCTGAGGTTTCATCGAGTGATTGCCCTTGACTTCTTAGGCTT
TGGCTTCAGTGACAAACCGAGACCACACCACTATTCCATATTTGAGCAGGCCAGCATCGTGGAGGCGCTTTTGCGCCATC
TAGGACTCCAGAACCGTAGGATCAACCTGTTGTCTCACGACTATGGAGACATTGTTGCTCAGGAGCTGCTGTATAGGTAC
AAGCAAAATCGATCTGGCCGGCTTACTATAAAGAGTCTCTGTCTGTCAAATGGAGGTATCTTTCCTGAGACTCACCGGCC
TCTCCTTCTCCAAAAGCTACTTAAAGATGGAGGTGTGCTGTCACCCATCCTCACGAGGTTGATGAACTTCTTTGTATTTT
CTCGAGGTCTTACTCCCGTCTTTGGACCATACACTCGACCCTCCGAAAGTGAGCTGTGGGATATGTGGGCAGGGATCCGA
AACAATGACGGGAACTTGGTGATTGACAGTCTCTTACAGTACATTAATCAGAGGAAGAAGTTTAGAAGACGCTGGGTGGG
AGCTCTTGCCTCTGTAACTATTCCCATTCATTTTATCTATGGGCCATTGGATCCTATAAATCCCTATCCAGAGTTTTTGG
AGCTGTACAGGAAAACGCTGCCGCGGTCCACAGTGTCGATTCTGGATGACCACATTAGCCACTACCCACAGCTAGAGGAT
CCCATGGGCTTCTTGAATGCATATATGGGCTTCATCAACTCCTTCTGA
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000005659 | ortholog_one2one | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000010760 | possible_ortholog | 2 retrogenes | |
| Felis catus | ENSFCAG00000022984 | ortholog_one2one | 5 retrogenes | |
| Loxodonta africana | ENSLAFG00000006066 | ortholog_one2one | 3 retrogenes | |
| Macropus eugenii | ENSMEUG00000008227 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000006129 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000009499 | ortholog_one2many | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000012841 | ortholog_one2one | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000009224 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000018006 | ortholog_one2one | 4 retrogenes | |
| Pan troglodytes | ENSPTRG00000019698 | ortholog_one2one | 2 retrogenes | |
| Sorex araneus | ENSSARG00000000502 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000004934 | ortholog_one2one | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_itri_1210 | 73.48 | 53.43 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_itri_1610 | 93.12 | 64.48 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSSTOG00000020977 retrocopies