Parental gene:

MEST, ENSCJAG00000010760

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:8:115748520..115768940(-)


>ENSCJAG00000010760
ATGGTGCGCCGAGATCGCCTCCGCAGGATGAGGGAGTGGTGGGTCCAGGTGGGGCTGTTGGCTATGCCCCTGCTTGCTGC
ATACCTGCACATCCCACCCCCTCAGCTCTCCCCTGCCCTGCACTCATGGAAGTCTTCAGGCAAGTTTTTCACTTACAAGG
GACTGCGTATCTTCTACCAAGACTCTGTGGGTGTGGTTGGAAGTCCGGAGATAGTTGTGCTTTTACATGGTTTTCCAACA
TCCAGCTATGATTGGTACAAGATTTGGGAAGGTCTGACCTTGAGGTTTCATCGGGTGATTGCTCTTGATTTCTTAGGCTT
TGGCTTCAGTGACAAACCGAGACCGCATCACTATTCCATATTTGAGCAGGCCAGTATCGTGGAAGCTCTTTTGAGGCATC
TGGGGCTCCAGAACCGCAGGATCAACCTTCTGTCTCATGACTATGGAGATATTGTTGCTCAGGAGCTTCTCTACAGGTAC
AAGCAGAATCGATCTGGCCGGCTTACCATAAAGAGTCTCTGTCTGTCAAATGGAGGTATCTTTCCTGAGACTCACCGTCC
ACTCCTTCTCCAAAAGCTACTCAAAGATGGAGGTGTGCTGTCACCCATCCTCACACGACTGATGAACTTCTTTGTATTCT
CGCGAGGTCTCACCCCAGTCTTTGGGCCGTATACTCGGCCCTCTGAGAGTGAGCTGTGGGACATGTGGGCAGGGATCCGC
AACAATGACGGGAACTTAGTCATTGACAGTCTCTTACAGTACATCAATCAGAGGAAGAAGTTCAGAAGGCGCTGGGTGGG
AGCTCTTGCCTCTGTAACTATCCCCATTCATTTTATCTATGGGCCACTGGATCCTGTAAATCCCTATCCAGAGTTTTTGG
AGCTGTACAGGAAAACGCTGCCGCGGTCCACAGTGTCGATTCTGGATGACCACATTAGCCACTATCCACAGCTAGAGGAT
CCCATGGGCTTCTTGAATGCATATATGGGCTTCATCAACTCCTTCTGA

Library Parental gene expression (RPM)
SRP051959_spleen 43 .40 RPM
SRP051959_skeletal_muscle 1 .05 RPM
SRP051959_lymph_node 1 .46 RPM
SRP051959_lung 2 .86 RPM
SRP051959_liver 30 .39 RPM
SRP051959_kidney 5 .92 RPM
SRP051959_heart 11 .63 RPM
SRP051959_colon 3 .59 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005659 ortholog_one2many 2 retrogenes
retro_amel_1177, retro_amel_1874,
Felis catus ENSFCAG00000022984 ortholog_one2many 5 retrogenes
retro_fcat_1067, retro_fcat_1645, retro_fcat_1693, retro_fcat_2004, retro_fcat_326,
Loxodonta africana ENSLAFG00000006066 ortholog_one2many 3 retrogenes
retro_lafr_578, retro_lafr_584, retro_lafr_748,
Macropus eugenii ENSMEUG00000008227 ortholog_one2many 1 retrogene
retro_meug_885,
Microcebus murinus ENSMICG00000006129 possible_ortholog 1 retrogene
retro_mmur_1091,
Macaca mulatta ENSMMUG00000009499 ortholog_many2many 2 retrogenes
retro_mmul_1936, retro_mmul_94,
Nomascus leucogenys ENSNLEG00000012841 possible_ortholog 3 retrogenes
retro_nleu_1065, retro_nleu_515, retro_nleu_790,
Otolemur garnettii ENSOGAG00000009224 possible_ortholog 1 retrogene
retro_ogar_3464,
Pongo abelii ENSPPYG00000018006 possible_ortholog 4 retrogenes
retro_pabe_2337, retro_pabe_2510, retro_pabe_2511, retro_pabe_866,
Pan troglodytes ENSPTRG00000019698 possible_ortholog 2 retrogenes
retro_ptro_1769, retro_ptro_2045,
Sorex araneus ENSSARG00000000502 ortholog_one2many 1 retrogene
retro_sara_352,
Ictidomys tridecemlineatus ENSSTOG00000020977 possible_ortholog 2 retrogenes
retro_itri_1210, retro_itri_1610,
Tupaia belangeri ENSTBEG00000008404 ortholog_one2many 2 retrogenes
retro_tbel_1480, retro_tbel_526,
Tursiops truncatus ENSTTRG00000004934 ortholog_one2many 4 retrogenes
retro_ttru_1026, retro_ttru_1115, retro_ttru_1133, retro_ttru_1907,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1563 79.66 52.84
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2. retro_cjac_3931 88.73 72.95
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Download FASTA sequences of all ENSCJAG00000010760 retrocopies