Parental gene:

GPBP1, ENSSTOG00000003057

Aliases:None
Description:GC-rich promoter binding protein 1 [Source:HGNC Symbol;Acc:29520]
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393290.1:10719374..10784370(-)


>ENSSTOG00000003057
ATGGCGCAGCATGACTTTGCTCCAGCCTGGCTTAATTTTCCTACTCCACCATCATCAACAAAGTCATCATTGAATTTTGA
GAAGCATTCTGAAAATTTTTCATGGACGGAAAATCGTTATGATGTGAATCGTCGAAGACACAATTCTTCAGATGGCTTTG
ATTCTGGTATTGGACGTTCTAATGGAGGTAATTTTGGAAGGAAAGAAAAAAGTGGATGGCGTACGCATGGCAGAAATGGT
ACTGAAAACATAAATCATCGAGGAGGATACCATGGTGGAAATTCCCGTTCTCGTAGCAGTATTTTCCATTCTGGAAAAAG
CCAAGGTCTACATGAAAACAATATACCTGACAACGAAACCGGAAGGAAAGAAGATAAAAGAGAACGCAAACAGTTTGAGG
CTGAGGATTTTCCATCTTTAAATCCTGAATATGAGAGAGAACCAAATCAGAATAAATCATTAGCTGCAGGTGTATGGGAA
TATCCTCCGAATCCTAAATCTAGAGCTCCAAGGATGCTGGTCATTAAGAAAGGTAATACAAAAGACTTACAGCTATCTGG
ATTCCCTGTAGTAGGAAATCTTCAGTCACAGCCAGTTAAGAATGGAACTGGTCCGAGTGTTTATAAAGGCTTAGTCCCTA
AACCTGCTGCTCCACCTACAAAACCTACACAGTGGAAAAGCCAAACTAAAGAAAATAAGGTTGGGACTTCTTTCCCTCAT
GAATCTTCATATGGTGTTGGCAACTTTAATGCTTTTAAATCAACTGCCAAGAATTTTAGTCCATCACCAAATTCAGTGAA
AGAGTGTAATCGTTCAAATTCCTCTTCACCTGTTGACAAACTTAATCAACAGCCTCGTCTAACCAAACTGACACGAATGC
GCACTGATAAGAAGAGTGAATTTTTGAAAGCATTGAAAAGGGACAGAGTAGAAGAAGAACATGAAGATGAAAGCCATGCT
GGCTCAGAGAAGGATGAAGACTCATTTAATTTGCATAACAGCAATAGTACTCACCAAGAAAGGGATATAAACAGAAACTT
TGATGAAAATGAAATTCCACAAGAGAATGGCAATGCCTCAGTGATTTCCCAACAGATCATTCGGTCTTCAACCTTTCCAC
AAACTGATGTTCTTTCCAGTTCACTTGAGGCAGAACACAGATTGTTAAAGGAAATGGGTTGGCAGGAAGACAGTGAAAAT
GATGAAACATGTGCTCCCTTAACTGAGGATGAAATGAGAGAATTCCAAGTTATTAGTGAACAGTTGCAGAAGAATGGTCT
GAGAAAAAATGGTATTTTGAAAAATGGCCTGATCTGTGACTTCAAGTTTGGACCGTGGAAAAACAGCACTTTCAAACCCA
CAATTGAGAATGATGACACAGAGACAAGTAGCAGTGACACATCAGATGATGATGATGTGTGA

Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000015104 ortholog_one2one 1 retrogene
retro_cjac_3961,
Microcebus murinus ENSMICG00000014678 ortholog_one2one 1 retrogene
retro_mmur_1198,
Myotis lucifugus ENSMLUG00000007462 ortholog_one2many 1 retrogene
retro_mluc_155,
Monodelphis domestica ENSMODG00000019540 ortholog_one2many 1 retrogene
retro_mdom_283,
Otolemur garnettii ENSOGAG00000013991 ortholog_one2one 1 retrogene
retro_ogar_1077,
Ictidomys tridecemlineatus ENSSTOG00000013491 within_species_paralog 1 retrogene
retro_itri_243,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_1678 96.86 67.23
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Download FASTA sequences of all ENSSTOG00000003057 retrocopies